Paul Bédaride [Thu, 11 Apr 2013 14:41:35 +0000 (16:41 +0200)]
Remove mpi alltoall{,w}_pairwise (identical to ring)
Paul Bédaride [Thu, 11 Apr 2013 14:20:05 +0000 (16:20 +0200)]
Add mpi alltoallv ring ring-light-barrier ring-mpi-barrier ring-one-barrier
Paul Bédaride [Thu, 11 Apr 2013 12:56:21 +0000 (14:56 +0200)]
Add mpi alltoallv pair
Paul Bédaride [Thu, 11 Apr 2013 12:51:21 +0000 (14:51 +0200)]
Add mpi alltoallv pair_light_barrier pair_mpi_barrier pair_one_barrier
Augustin Degomme [Thu, 11 Apr 2013 09:02:03 +0000 (11:02 +0200)]
try not to copy from outside of an array
Augustin Degomme [Thu, 11 Apr 2013 09:01:24 +0000 (11:01 +0200)]
add missing coll test
Arnaud Giersch [Wed, 10 Apr 2013 15:27:30 +0000 (17:27 +0200)]
Disable stream buffer when reading /proc/self/maps.
I don't fully understand why it is necessary but, without this change, the MC
tests may terminate on a SIGSEGV. It is likely because some memory regions are
unmapped on fclose, and then the real memory map is different from the
informations that were read.
Paul Bédaride [Wed, 10 Apr 2013 16:25:27 +0000 (18:25 +0200)]
Add mpi alltoallv bruck and fix mpi alltoallv pairwise
Paul Bédaride [Wed, 10 Apr 2013 15:03:54 +0000 (17:03 +0200)]
Add mpi alltoallv pairwise
Paul Bédaride [Wed, 10 Apr 2013 13:38:23 +0000 (15:38 +0200)]
Add test for mpi alltoallv
Marion Guthmuller [Wed, 10 Apr 2013 10:08:31 +0000 (12:08 +0200)]
model-checker : update tesh for jenkins (memory management seems different between ubuntu and debian)
Arnaud Giersch [Wed, 10 Apr 2013 08:10:23 +0000 (10:10 +0200)]
Remove algorithm bcast-TSB.
It looks like a prototype working only with 128 nodes,
and being superseded by bcast-NTSB.
Arnaud Giersch [Wed, 10 Apr 2013 08:04:56 +0000 (10:04 +0200)]
Fix out-of-source build.
Arnaud Giersch [Mon, 8 Apr 2013 14:24:09 +0000 (16:24 +0200)]
Remove unused variables.
Arnaud Giersch [Tue, 9 Apr 2013 20:08:37 +0000 (22:08 +0200)]
Initialize remainder.
Again, this is only to shut gcc up.
Arnaud Giersch [Tue, 9 Apr 2013 20:02:43 +0000 (22:02 +0200)]
Initialize field loopback_link.
Not sure if it's really needed, but gcc warns that it may be uninitialized.
Arnaud Giersch [Tue, 9 Apr 2013 15:29:55 +0000 (17:29 +0200)]
Regenerate mmalloc_32.tesh.
Arnaud Giersch [Mon, 8 Apr 2013 15:54:22 +0000 (17:54 +0200)]
Remove temporary files.
Augustin Degomme [Tue, 9 Apr 2013 16:19:00 +0000 (18:19 +0200)]
replace star_reduction by our own reduction
Augustin Degomme [Tue, 9 Apr 2013 15:02:32 +0000 (17:02 +0200)]
remove a few more leaks to please valgrind, but nothing important
Arnaud Giersch [Mon, 8 Apr 2013 16:30:24 +0000 (18:30 +0200)]
Fix hack for smpi_replay in smpirun.
Arnaud Giersch [Mon, 8 Apr 2013 15:51:58 +0000 (17:51 +0200)]
Remove redundant file.
It's the same as src/smpi/colls/colls_global.c.
Arnaud Giersch [Mon, 8 Apr 2013 15:50:04 +0000 (17:50 +0200)]
Add missing calls to XBT_LOG_CONNECT.
Arnaud Giersch [Thu, 4 Apr 2013 14:24:23 +0000 (16:24 +0200)]
Remove useless code.
Arnaud Giersch [Thu, 4 Apr 2013 14:16:05 +0000 (16:16 +0200)]
Change file mode (remove execute bit).
Paul Bédaride [Tue, 9 Apr 2013 15:16:06 +0000 (17:16 +0200)]
Fix mpi reduce tesh
Paul Bédaride [Tue, 9 Apr 2013 13:42:46 +0000 (15:42 +0200)]
Fix mpi bcast flattree-pipeline collective
Augustin Degomme [Tue, 9 Apr 2013 09:58:39 +0000 (11:58 +0200)]
Requests are deallocated inside the Waitall, do not deallocate them again after
Augustin Degomme [Tue, 9 Apr 2013 09:23:28 +0000 (11:23 +0200)]
do not allocate 0 sized buffers which won't be copied/freed after
Augustin Degomme [Tue, 9 Apr 2013 08:08:44 +0000 (10:08 +0200)]
avoid unitialized use
Augustin Degomme [Tue, 9 Apr 2013 08:08:31 +0000 (10:08 +0200)]
Fix possible leak with 0 sized messages
Augustin Degomme [Mon, 8 Apr 2013 18:02:31 +0000 (20:02 +0200)]
Avoid marking as finished and deleting requests when passing multiple times inside a wait/test
Augustin Degomme [Mon, 8 Apr 2013 17:59:23 +0000 (19:59 +0200)]
Attempt to fix problems with complex datatype copy in smpi
Augustin Degomme [Mon, 8 Apr 2013 14:51:21 +0000 (16:51 +0200)]
Fix possible memory leak
Augustin Degomme [Fri, 5 Apr 2013 08:04:15 +0000 (10:04 +0200)]
avoid looping forever on iprobe
Augustin Degomme [Fri, 5 Apr 2013 08:03:50 +0000 (10:03 +0200)]
Fix bug with tracing of smpi internals and MPI_ANY_SOURCE
Paul Bédaride [Mon, 8 Apr 2013 15:39:58 +0000 (17:39 +0200)]
Change mpi_bcast teshtest to handle all cases
Paul Bédaride [Mon, 8 Apr 2013 12:50:52 +0000 (14:50 +0200)]
change collective calls in smpi_replay
Paul Bédaride [Mon, 8 Apr 2013 11:41:37 +0000 (13:41 +0200)]
Add missing file in DefinePackage
Paul Bédaride [Mon, 8 Apr 2013 11:26:28 +0000 (13:26 +0200)]
Use simgrid function instead of MPI in collectives
Augustin Degomme [Thu, 4 Apr 2013 14:10:42 +0000 (16:10 +0200)]
remove another algorithm
Augustin Degomme [Thu, 4 Apr 2013 14:06:39 +0000 (16:06 +0200)]
fix two failing tests
Augustin Degomme [Thu, 4 Apr 2013 13:50:53 +0000 (15:50 +0200)]
port a reduce algorithms with internal smpi calls
Augustin Degomme [Thu, 4 Apr 2013 13:47:52 +0000 (15:47 +0200)]
remove a redundant algorithm
Fix bug with macos
Paul Bédaride [Thu, 4 Apr 2013 09:15:57 +0000 (11:15 +0200)]
Add tesh files to test all new collectives
Martin Quinson [Wed, 3 Apr 2013 16:38:07 +0000 (18:38 +0200)]
little refresh, and a word about git commit messages
Martin Quinson [Wed, 3 Apr 2013 16:34:01 +0000 (18:34 +0200)]
use links in the manual TOC
Augustin Degomme [Wed, 3 Apr 2013 14:37:39 +0000 (16:37 +0200)]
another allreduce ported
Augustin Degomme [Wed, 3 Apr 2013 14:25:42 +0000 (16:25 +0200)]
fix a bug happening with manually defined clusters
Augustin Degomme [Wed, 3 Apr 2013 14:25:18 +0000 (16:25 +0200)]
adapt two collectives of starmpi to avoid timing issues, by using only smpi calls inside
Augustin Degomme [Wed, 3 Apr 2013 14:24:43 +0000 (16:24 +0200)]
actually use starmpi collectives for allreduce
Marion Guthmuller [Wed, 3 Apr 2013 14:18:04 +0000 (16:18 +0200)]
model-checker : new examples (with tesh) for verification of liveness properties on chord
Marion Guthmuller [Wed, 3 Apr 2013 13:56:28 +0000 (15:56 +0200)]
model-checker : display address of communication in Wait request if verbose log
Marion Guthmuller [Wed, 3 Apr 2013 09:34:47 +0000 (11:34 +0200)]
model-checker : iSend/iRecv independent with Wait but not with WaitTimeout
Marion Guthmuller [Tue, 2 Apr 2013 13:40:44 +0000 (15:40 +0200)]
model-checker : state at max depth may have none interleaved processes
Augustin Degomme [Tue, 2 Apr 2013 13:13:33 +0000 (15:13 +0200)]
have sendrecv_replace work with non contiguous datatypes and really pass tests
Marion Guthmuller [Tue, 2 Apr 2013 12:12:54 +0000 (14:12 +0200)]
model-checker : update tesh
Marion Guthmuller [Tue, 2 Apr 2013 12:05:10 +0000 (14:05 +0200)]
model-checker : signed int instead of unsigned int
Marion Guthmuller [Tue, 2 Apr 2013 08:48:58 +0000 (10:48 +0200)]
model-checker : update tesh (different log messages)
Marion Guthmuller [Tue, 2 Apr 2013 08:09:29 +0000 (10:09 +0200)]
model-checker : create dot_output file after MC_do_the_modelcheck_for_real and write only if not NULL
Marion Guthmuller [Mon, 1 Apr 2013 16:31:24 +0000 (18:31 +0200)]
model-checker : restore independence between iSend/iRecv and Wait requests
Marion Guthmuller [Mon, 1 Apr 2013 12:33:01 +0000 (14:33 +0200)]
model-checker : update state equality detection
- ignore field in mmalloc meta-data equal to the amount of elements to ignore in this area
- match_equals was applied twice in heap comparison algorithm, remove one unnecessary call
- apply these changes in system-state equality comparison
Paul Bédaride [Fri, 29 Mar 2013 16:29:03 +0000 (17:29 +0100)]
Tesh sort wanted output
Augustin Degomme [Thu, 14 Mar 2013 12:41:04 +0000 (13:41 +0100)]
new attempt to stabilize the use of underscores on f90/f77/f2c
Augustin Degomme [Fri, 29 Mar 2013 09:21:17 +0000 (10:21 +0100)]
freebsd compatibility
Augustin Degomme [Tue, 12 Mar 2013 15:07:53 +0000 (16:07 +0100)]
remove states for the new tracing option, as only links are really useful
Augustin Degomme [Mon, 11 Mar 2013 15:30:00 +0000 (16:30 +0100)]
switch back from two underscores to one in fortran names, to allow linking with external libs
Augustin Degomme [Mon, 11 Mar 2013 15:29:22 +0000 (16:29 +0100)]
add a cfg:tracing/smpi/internals option, to trace all pt2pt communications during a collective one
This provide a better view of the pattern, useful for debugging
Augustin Degomme [Thu, 7 Mar 2013 09:49:31 +0000 (10:49 +0100)]
update dtd
Augustin Degomme [Thu, 7 Mar 2013 09:49:23 +0000 (10:49 +0100)]
add a loopback_lat and loopback_bw to cluster tag
Augustin Degomme [Thu, 7 Mar 2013 09:48:22 +0000 (10:48 +0100)]
add limiter_link option to cluster tag, to add a pseudo-shared link, to limit bandwidth reachable with a fullduplex link
Augustin Degomme [Wed, 6 Mar 2013 16:30:05 +0000 (17:30 +0100)]
add a bunch of bindings/new definitions of unimplemented MPI-2 functions, to make bigdft happy again
Arnaud Giersch [Thu, 28 Mar 2013 22:09:34 +0000 (23:09 +0100)]
Cosmetics: those are regexps.
Arnaud Giersch [Thu, 28 Mar 2013 21:20:30 +0000 (22:20 +0100)]
Remove extraneous parentheses, and silent clang.
Arnaud Giersch [Thu, 28 Mar 2013 21:06:53 +0000 (22:06 +0100)]
Make dist complete, and fix "make distcheck".
Arnaud Giersch [Thu, 28 Mar 2013 20:54:15 +0000 (21:54 +0100)]
Fix build without smpi.
Arnaud Giersch [Thu, 28 Mar 2013 20:47:04 +0000 (21:47 +0100)]
Don't build smpi in a separate library anymore.
Paul Bédaride [Thu, 28 Mar 2013 16:15:32 +0000 (17:15 +0100)]
Add collectives for allgather, allreduce, bcast and reduce
Marion Guthmuller [Wed, 27 Mar 2013 12:17:43 +0000 (13:17 +0100)]
model-checker : add example (electric_fence) to check the soundness of the verification with DPOR and delete another one (random_test)
Martin Quinson [Wed, 27 Mar 2013 00:27:37 +0000 (01:27 +0100)]
fix for windows -- not sure if it's still mandatory, but I guess so
Arnaud Giersch [Mon, 25 Mar 2013 21:27:09 +0000 (22:27 +0100)]
Fix various build errors.
Mainly unused variables, or pointer arithmetic with pointers to void.
The builds with compile optimizations are still broken, because of smpi symbols
imported in libsimgrid, but I'm not sure how to fix this properly.
Arnaud Giersch [Mon, 25 Mar 2013 21:21:15 +0000 (22:21 +0100)]
Reindent files before changes.
Arnaud Giersch [Mon, 25 Mar 2013 21:20:34 +0000 (22:20 +0100)]
Missing include.
Marion Guthmuller [Mon, 25 Mar 2013 22:47:08 +0000 (23:47 +0100)]
model-checker : variable declaration deleted with a previous conflict
Marion Guthmuller [Mon, 25 Mar 2013 22:29:42 +0000 (23:29 +0100)]
model-checker : add variable deleted before to resolve a merge conflict
Marion Guthmuller [Mon, 25 Mar 2013 21:37:39 +0000 (22:37 +0100)]
model-checker : ignore variable about time used with tracing
Marion Guthmuller [Mon, 25 Mar 2013 21:36:36 +0000 (22:36 +0100)]
model-checker : if acceptance cycle is detected, get num of equal pairs
Marion Guthmuller [Mon, 25 Mar 2013 21:02:50 +0000 (22:02 +0100)]
model-checker : last fix in DPOR algorithm if max depth is reached
If max_depth is reached, the last state in stack may have a process
interleaved with a request not executed yet. In that case, we start to
apply the independence theorem with this last request not executed
yet. Otherwise (no more process to interleave in the last state of the
stack), last state is deleted before starting to apply independence theorem.
Marion Guthmuller [Thu, 21 Mar 2013 14:38:13 +0000 (15:38 +0100)]
model-checker : update bugged1 tesh
Martin Quinson [Mon, 25 Mar 2013 21:02:34 +0000 (22:02 +0100)]
documentation cosmetics
Martin Quinson [Mon, 25 Mar 2013 20:36:35 +0000 (21:36 +0100)]
fix some simple errors in the commit of Paul (not enough to compile here)
Martin Quinson [Mon, 25 Mar 2013 20:31:56 +0000 (21:31 +0100)]
rework the SMPI documentation quite a bit
Martin Quinson [Mon, 25 Mar 2013 19:52:35 +0000 (20:52 +0100)]
split SMPI documentation into a specific file (no real change)
Jonathan Rouzaud-Cornabas [Mon, 25 Mar 2013 16:35:26 +0000 (17:35 +0100)]
Merge branch 'master' of git+ssh://scm.gforge.inria.fr//gitroot/simgrid/simgrid
Jonathan Rouzaud-Cornabas [Mon, 25 Mar 2013 16:35:14 +0000 (17:35 +0100)]
Fix sendBounded java binding
Paul Bédaride [Mon, 25 Mar 2013 16:24:48 +0000 (17:24 +0100)]
Add colls.h to DefinePackages
Paul Bédaride [Mon, 25 Mar 2013 16:07:50 +0000 (17:07 +0100)]
Merge branch 'master' of git+ssh://scm.gforge.inria.fr//gitroot/simgrid/simgrid
Paul Bédaride [Mon, 25 Mar 2013 13:50:46 +0000 (14:50 +0100)]
Add alltoall collectives from starmpi
Arnaud Giersch [Thu, 21 Mar 2013 14:08:23 +0000 (15:08 +0100)]
Dumb commit: kill empty line.
Arnaud Giersch [Thu, 21 Mar 2013 14:04:33 +0000 (15:04 +0100)]
Kill unused variable.