echo "XXXXXXXXXXXXXXXX Install APT dependencies"
SUDO="" # to ease the local testing
$SUDO apt-get -y update
-$SUDO apt-get -y install git build-essential gfortran python-is-python3 python3-six python3-distutils python3-setuptools pkg-config automake cmake libboost-dev libblas-dev liblapack-dev wget
+$SUDO apt-get -y install python-is-python3 python3-setuptools libboost-dev libeigen3-dev
+$SUDO apt-get -y install --only-upgrade ca-certificates
echo "XXXXXXXXXXXXXXXX build and test BigDFT (git version)"
git clone --depth=1 https://gitlab.com/l_sim/bigdft-suite.git
cd bigdft-suite
-WORKSPACE=`pwd`
+WORKSPACE=$PWD
mkdir build && cd build
export PATH=$PWD/simgrid-dev/smpi_script/bin/:$PATH
export LD_LIBRARY_PATH=$PWD/simgrid-dev/lib/:$LD_LIBRARY_PATH
export JHBUILD_RUN_AS_ROOT=1
+#workaround issue with ntpoly 3.0.0
+sed -i 's|repository type="tarball" name="ntpoly" href="https://github.com/william-dawson/NTPoly/archive/"|repository type="git" name="ntpoly" href="https://github.com/william-dawson/"|' ../modulesets/hpc-upstream.modules
+sed -i 's|module="ntpoly-v3.0.0.tar.gz"|module="ntpoly"|' ../modulesets/hpc-upstream.modules
+
../Installer.py autogen -y
../Installer.py -f ../../tools/jenkins/gfortran-simgrid.rc -y build
export OMP_NUM_THREADS=1
+#workaround issue with profiling optimization (for fugaku) which prevent f_free_ptr to use the simgrid version. Fix pending.
+export FUTILE_PROFILING_DEPTH=-1
#cubic version
cd ../bigdft/tests/DFT/cubic/C
