1 /* Copyright (c) 2010-2020. The SimGrid Team.
2 * All rights reserved. */
4 /* This program is free software; you can redistribute it and/or modify it
5 * under the terms of the license (GNU LGPL) which comes with this package. */
7 #ifndef SMPI_FILE_HPP_INCLUDED
8 #define SMPI_FILE_HPP_INCLUDED
9 #include "simgrid/plugins/file_system.h"
10 #include "smpi_comm.hpp"
11 #include "smpi_coll.hpp"
12 #include "smpi_datatype.hpp"
13 #include "smpi_errhandler.hpp"
14 #include "smpi_info.hpp"
17 XBT_LOG_EXTERNAL_CATEGORY(smpi_pmpi);
21 class File : public F2C{
24 simgrid::s4u::File* file_;
26 MPI_Offset* shared_file_pointer_;
27 s4u::MutexPtr shared_mutex_;
30 MPI_Errhandler errhandler_;
32 MPI_Datatype filetype_;
36 File(MPI_Comm comm, const char *filename, int amode, MPI_Info info);
37 File(const File&) = delete;
38 File& operator=(const File&) = delete;
41 int get_position(MPI_Offset* offset) const;
42 int get_position_shared(MPI_Offset* offset) const;
44 MPI_Comm comm() const;
46 int seek(MPI_Offset offset, int whence);
47 int seek_shared(MPI_Offset offset, int whence);
48 int set_view(MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char* datarep, const Info* info);
49 int get_view(MPI_Offset* disp, MPI_Datatype* etype, MPI_Datatype* filetype, char* datarep) const;
51 void set_info( MPI_Info info);
52 static int read(MPI_File fh, void* buf, int count, const Datatype* datatype, MPI_Status* status);
53 static int read_shared(MPI_File fh, void* buf, int count, const Datatype* datatype, MPI_Status* status);
54 static int read_ordered(MPI_File fh, void* buf, int count, const Datatype* datatype, MPI_Status* status);
55 static int write(MPI_File fh, void* buf, int count, const Datatype* datatype, MPI_Status* status);
56 static int write_shared(MPI_File fh, const void* buf, int count, const Datatype* datatype, MPI_Status* status);
57 static int write_ordered(MPI_File fh, const void* buf, int count, const Datatype* datatype, MPI_Status* status);
58 template <int (*T)(MPI_File, void*, int, const Datatype*, MPI_Status*)>
59 int op_all(void* buf, int count, const Datatype* datatype, MPI_Status* status);
60 static int close(MPI_File *fh);
61 static int del(const char* filename, const Info* info);
62 MPI_Errhandler errhandler();
63 void set_errhandler( MPI_Errhandler errhandler);
64 static File* f2c(int id);
67 /* Read_all, Write_all : loosely based on */
68 /* @article{Thakur:1996:ETM:245875.245879,*/
69 /* author = {Thakur, Rajeev and Choudhary, Alok},*/
70 /* title = {An Extended Two-phase Method for Accessing Sections of Out-of-core Arrays},*/
71 /* journal = {Sci. Program.},*/
72 /* issue_date = {Winter 1996},*/
73 /* pages = {301--317},*/
75 template <int (*T)(MPI_File, void*, int, const Datatype*, MPI_Status*)>
76 int File::op_all(void* buf, int count, const Datatype* datatype, MPI_Status* status)
78 // get min and max offsets from everyone.
79 int size = comm_->size();
80 int rank = comm_->rank();
81 MPI_Offset min_offset = file_->tell();
82 MPI_Offset max_offset =
84 count * datatype->get_extent(); // cheating, as we don't care about exact data location, we can skip extent
85 MPI_Offset* min_offsets = new MPI_Offset[size];
86 MPI_Offset* max_offsets = new MPI_Offset[size];
87 simgrid::smpi::colls::allgather(&min_offset, 1, MPI_OFFSET, min_offsets, 1, MPI_OFFSET, comm_);
88 simgrid::smpi::colls::allgather(&max_offset, 1, MPI_OFFSET, max_offsets, 1, MPI_OFFSET, comm_);
89 MPI_Offset min = min_offset;
90 MPI_Offset max = max_offset;
93 for (int i = 0; i < size; i++) {
94 if (min_offsets[i] != max_offsets[i])
96 tot += (max_offsets[i] - min_offsets[i]);
97 if (min_offsets[i] < min)
99 if (max_offsets[i] > max)
100 max = max_offsets[i];
103 XBT_CDEBUG(smpi_pmpi, "my offsets to read : %lld:%lld, global min and max %lld:%lld", min_offset, max_offset, min,
106 delete[] min_offsets;
107 delete[] max_offsets;
111 MPI_Offset total = max - min;
112 if (total == tot && (datatype->flags() & DT_FLAG_CONTIGUOUS)) {
113 delete[] min_offsets;
114 delete[] max_offsets;
115 // contiguous. Just have each proc perform its read
116 if (status != MPI_STATUS_IGNORE)
117 status->count = count * datatype->size();
118 return T(this, buf, count, datatype, status);
121 // Interleaved case : How much do I need to read, and whom to send it ?
122 MPI_Offset my_chunk_start = (max - min + 1) / size * rank;
123 MPI_Offset my_chunk_end = ((max - min + 1) / size * (rank + 1));
124 XBT_CDEBUG(smpi_pmpi, "my chunks to read : %lld:%lld", my_chunk_start, my_chunk_end);
125 int* send_sizes = new int[size];
126 int* recv_sizes = new int[size];
127 int* send_disps = new int[size];
128 int* recv_disps = new int[size];
130 for (int i = 0; i < size; i++) {
132 send_disps[i] = 0; // cheat to avoid issues when send>recv as we use recv buffer
133 if ((my_chunk_start >= min_offsets[i] && my_chunk_start < max_offsets[i]) ||
134 ((my_chunk_end <= max_offsets[i]) && my_chunk_end > min_offsets[i])) {
135 send_sizes[i] = (std::min(max_offsets[i] - 1, my_chunk_end - 1) - std::max(min_offsets[i], my_chunk_start));
136 // store min and max offset to actually read
137 min_offset = std::min(min_offset, min_offsets[i]);
138 total_sent += send_sizes[i];
139 XBT_CDEBUG(smpi_pmpi, "will have to send %d bytes to %d", send_sizes[i], i);
142 min_offset = std::max(min_offset, my_chunk_start);
144 // merge the ranges of every process
145 std::vector<std::pair<MPI_Offset, MPI_Offset>> ranges;
146 for (int i = 0; i < size; ++i)
147 ranges.push_back(std::make_pair(min_offsets[i], max_offsets[i]));
148 std::sort(ranges.begin(), ranges.end());
149 std::vector<std::pair<MPI_Offset, MPI_Offset>> chunks;
150 chunks.push_back(ranges[0]);
152 unsigned int nchunks = 0;
154 while (i < ranges.size()) {
155 if (ranges[i].second > chunks[nchunks].second) {
156 // else range included - ignore
157 if (ranges[i].first > chunks[nchunks].second) {
158 // new disjoint range
159 chunks.push_back(ranges[i]);
163 chunks[nchunks].second = ranges[i].second;
168 // what do I need to read ?
169 MPI_Offset totreads = 0;
170 for (i = 0; i < chunks.size(); i++) {
171 if (chunks[i].second < my_chunk_start)
173 else if (chunks[i].first > my_chunk_end)
176 totreads += (std::min(chunks[i].second, my_chunk_end - 1) - std::max(chunks[i].first, my_chunk_start));
178 XBT_CDEBUG(smpi_pmpi, "will have to access %lld from my chunk", totreads);
180 unsigned char* sendbuf = smpi_get_tmp_sendbuffer(total_sent);
183 seek(min_offset, MPI_SEEK_SET);
184 T(this, sendbuf, totreads / datatype->size(), datatype, status);
186 simgrid::smpi::colls::alltoall(send_sizes, 1, MPI_INT, recv_sizes, 1, MPI_INT, comm_);
188 for (int i = 0; i < size; i++) {
189 recv_disps[i] = total_recv;
190 total_recv += recv_sizes[i];
192 // Set buf value to avoid copying dumb data
193 simgrid::smpi::colls::alltoallv(sendbuf, send_sizes, send_disps, MPI_BYTE, buf, recv_sizes, recv_disps, MPI_BYTE,
195 if (status != MPI_STATUS_IGNORE)
196 status->count = count * datatype->size();
197 smpi_free_tmp_buffer(sendbuf);
202 delete[] min_offsets;
203 delete[] max_offsets;