SMPI network calibration: tutorial

[simgrid.git] / tools / cmake / DefinePackages.cmake

diff --git a/tools/cmake/DefinePackages.cmake b/tools/cmake/DefinePackages.cmake
index 231e6ab..ab7863b 100644 (file)
--- a/tools/cmake/DefinePackages.cmake
+++ b/tools/cmake/DefinePackages.cmake
@@ -6,7 +6,6 @@ set(EXTRA_DIST
   src/include/mc/datatypes.h
   src/include/mc/mc.h
   src/include/simgrid/sg_config.hpp
-  src/include/surf/surf.hpp
   src/include/xbt/coverage.h
   src/include/xbt/parmap.hpp
   src/include/xbt/mmalloc.h
@@ -27,7 +26,6 @@ set(EXTRA_DIST
   src/simix/popping_generated.cpp
   src/simix/popping_enum.hpp
   src/simix/popping_accessors.hpp
-  src/simix/smx_private.hpp
   src/smpi/colls/coll_tuned_topo.hpp
   src/smpi/colls/colls_private.hpp
   src/smpi/colls/smpi_mvapich2_selector_stampede.hpp
@@ -36,11 +34,13 @@ set(EXTRA_DIST
   src/smpi/smpi_main.c
   src/smpi/smpi_replay_main.cpp
   src/surf/cpu_cas01.hpp
-  src/surf/cpu_interface.hpp
   src/surf/cpu_ti.hpp
   src/surf/network_cm02.hpp
   src/surf/network_constant.hpp
   src/surf/network_interface.hpp
+  src/surf/LinkImpl.hpp
+  src/surf/LinkImplIntf.hpp
+  src/surf/SplitDuplexLinkImpl.hpp
   src/surf/network_ns3.hpp
   src/surf/network_smpi.hpp
   src/surf/network_ib.hpp
@@ -53,7 +53,6 @@ set(EXTRA_DIST
 
   src/surf/disk_s19.hpp
   src/surf/surf_interface.hpp
-  src/surf/surf_private.hpp
   src/surf/host_clm03.hpp
   src/surf/HostImpl.hpp
   src/surf/ptask_L07.hpp
@@ -80,7 +79,6 @@ set(EXTRA_DIST
   tools/lualib.patch
   teshsuite/lua/lua_platforms.tesh
   examples/smpi/mc/only_send_deterministic.tesh
-  examples/smpi/mc/non_deterministic.tesh
   )
 
 set(SMPI_SRC
@@ -123,6 +121,7 @@ set(SMPI_SRC
   src/smpi/include/smpi_info.hpp
   src/smpi/include/smpi_keyvals.hpp
   src/smpi/include/smpi_op.hpp
+  src/smpi/include/smpi_replay.hpp
   src/smpi/include/smpi_request.hpp
   src/smpi/include/smpi_status.hpp
   src/smpi/include/smpi_topo.hpp
@@ -308,15 +307,21 @@ set(SURF_SRC
   src/kernel/lmm/maxmin.cpp
 
   src/kernel/resource/Action.cpp
-  src/kernel/resource/Model.cpp
+  src/kernel/resource/CpuImpl.cpp
+  src/kernel/resource/CpuImpl.hpp
   src/kernel/resource/DiskImpl.cpp
   src/kernel/resource/DiskImpl.hpp
+  src/kernel/resource/Model.cpp
+  src/kernel/resource/Resource.hpp
+  src/kernel/resource/VirtualMachineImpl.hpp
+  src/kernel/resource/VirtualMachineImpl.cpp
 
   src/kernel/resource/profile/DatedValue.cpp
   src/kernel/resource/profile/DatedValue.hpp
   src/kernel/resource/profile/Event.hpp
   src/kernel/resource/profile/FutureEvtSet.cpp
   src/kernel/resource/profile/FutureEvtSet.hpp
+  src/kernel/resource/profile/ProfileBuilder.cpp
   src/kernel/resource/profile/Profile.cpp
   src/kernel/resource/profile/Profile.hpp
   src/kernel/resource/profile/StochasticDatedValue.cpp
@@ -337,19 +342,21 @@ set(SURF_SRC
   src/kernel/routing/VivaldiZone.cpp
   src/kernel/routing/WifiZone.cpp
 
+  src/kernel/timer/Timer.cpp
+
   src/kernel/EngineImpl.cpp
   src/kernel/EngineImpl.hpp
 
   src/surf/cpu_cas01.cpp
-  src/surf/cpu_interface.cpp
   src/surf/cpu_ti.cpp
   src/surf/disk_s19.cpp
   src/surf/network_cm02.cpp
   src/surf/network_constant.cpp
   src/surf/network_interface.cpp
+  src/surf/LinkImpl.cpp
+  src/surf/SplitDuplexLinkImpl.cpp
   src/surf/network_wifi.cpp
   src/surf/sg_platf.cpp
-  src/surf/surf_c_bindings.cpp
   src/surf/surf_interface.cpp
   src/surf/xml/platf.hpp
   src/surf/xml/platf_private.hpp
@@ -361,7 +368,7 @@ set(SURF_SRC
   )
 
 set(PLUGINS_SRC
-  src/plugins/dirty_page_tracking.cpp
+  src/plugins/ProducerConsumer.cpp
   src/plugins/host_dvfs.cpp
   src/plugins/host_energy.cpp
   src/plugins/link_energy.cpp
@@ -369,12 +376,7 @@ set(PLUGINS_SRC
   src/plugins/host_load.cpp
   src/plugins/link_load.cpp
   src/plugins/file_system/s4u_FileSystem.cpp
-  src/plugins/vm/VirtualMachineImpl.hpp
-  src/plugins/vm/s4u_VirtualMachine.cpp
-  src/plugins/vm/VirtualMachineImpl.hpp
-  src/plugins/vm/VirtualMachineImpl.cpp
-  src/plugins/vm/VmHostExt.hpp
-  src/plugins/vm/VmHostExt.cpp
+  src/plugins/vm/dirty_page_tracking.cpp
   src/plugins/vm/VmLiveMigration.cpp
   src/plugins/vm/VmLiveMigration.hpp
   )
@@ -392,8 +394,6 @@ set(SIMIX_SRC
   src/kernel/context/ContextSwapped.hpp
   src/kernel/context/ContextThread.cpp
   src/kernel/context/ContextThread.hpp
-  src/simix/smx_deployment.cpp
-  src/simix/smx_global.cpp
   src/simix/popping.cpp
   src/kernel/activity/ActivityImpl.cpp
   src/kernel/activity/ActivityImpl.hpp
@@ -452,6 +452,7 @@ set(S4U_SRC
   src/s4u/s4u_Mutex.cpp
   src/s4u/s4u_Netzone.cpp
   src/s4u/s4u_Semaphore.cpp
+  src/s4u/s4u_VirtualMachine.cpp
 )
 
 set(SIMGRID_SRC
@@ -633,7 +634,7 @@ set(MC_SRC
   src/mc/sosp/Region.hpp
   src/mc/sosp/Snapshot.hpp
   src/mc/sosp/Snapshot.cpp
-  
+
   src/mc/AddressSpace.hpp
   src/mc/ModelChecker.hpp
   src/mc/ModelChecker.cpp
@@ -678,7 +679,7 @@ set(headers_to_install
   include/simgrid/plugins/file_system.h
   include/simgrid/plugins/live_migration.h
   include/simgrid/plugins/load.h
-  include/simgrid/smpi/smpi_replay.hpp
+  include/simgrid/plugins/ProducerConsumer.hpp
   include/simgrid/instr.h
   include/simgrid/mailbox.h
   include/simgrid/simdag.h
@@ -686,6 +687,8 @@ set(headers_to_install
   include/simgrid/forward.h
   include/simgrid/simix.h
   include/simgrid/simix.hpp
+  include/simgrid/kernel/ProfileBuilder.hpp
+  include/simgrid/kernel/Timer.hpp
   include/simgrid/kernel/future.hpp
   include/simgrid/disk.h
   include/simgrid/host.h
@@ -714,8 +717,8 @@ set(headers_to_install
   include/simgrid/s4u.hpp
 
   include/simgrid/kernel/resource/Action.hpp
+  include/simgrid/kernel/resource/NetworkModelIntf.hpp
   include/simgrid/kernel/resource/Model.hpp
-  include/simgrid/kernel/resource/Resource.hpp
 
   include/simgrid/kernel/routing/ClusterZone.hpp
   include/simgrid/kernel/routing/DijkstraZone.hpp
@@ -849,11 +852,9 @@ set(DOC_SOURCES
   doc/doxygen/module-sd.doc
   doc/doxygen/module-surf.doc
   doc/doxygen/module-trace.doc
-  doc/doxygen/module-xbt.doc
   doc/doxygen/module-index.doc
   doc/doxygen/outcomes_vizu.doc
   doc/doxygen/platform.doc
-  doc/doxygen/platform_lua.doc
   doc/doxygen/uhood.doc
   doc/doxygen/uhood_switch.doc
   doc/doxygen/uhood_arch.doc
@@ -868,6 +869,7 @@ set(DOC_SOURCES
   docs/manpages/tesh.pod
 
   docs/Build.sh
+  docs/README.md
   docs/bin/extract_logs_hierarchy.pl
   docs/requirements.txt
   docs/source/conf.py
@@ -900,9 +902,14 @@ set(DOC_SOURCES
   docs/source/img/graphical-toc.svg
   docs/source/img/smpi_simgrid_alltoall_pair_16.png
   docs/source/img/smpi_simgrid_alltoall_ring_16.png
+  docs/source/img/starzone.drawio
+  docs/source/img/starzone.svg
   docs/source/img/zone_hierarchy.png
+  docs/source/img/zone_tree.drawio
+  docs/source/img/zone_tree.svg
+  docs/source/img/zoom_comm.drawio
+  docs/source/img/zoom_comm.svg
 
-  docs/ignored_symbols
   docs/source/application.rst
   docs/source/app_msg.rst
   docs/source/app_s4u.rst
@@ -913,16 +920,19 @@ set(DOC_SOURCES
   docs/source/Deploying_your_application.rst
   docs/source/Experimental_setup.rst
   docs/source/index.rst
+  docs/source/intl.rst
   docs/source/Introduction.rst
   docs/source/Installing_SimGrid.rst
   docs/source/Start_your_own_project.rst
   docs/source/Models.rst
   docs/source/Outcomes.rst
   docs/source/Platform.rst
+  docs/source/Platform_cpp.rst
   docs/source/Platform_examples.rst
   docs/source/Platform_howtos.rst
   docs/source/Platform_routing.rst
   docs/source/Plugins.rst
+  docs/source/Release_Notes.rst
   docs/source/XML_reference.rst
   docs/source/Design_goals.rst
 
@@ -950,6 +960,50 @@ set(DOC_SOURCES
   docs/source/tuto_smpi/gemm_mpi.cpp
   docs/source/tuto_smpi/roundtrip.c
 
+  docs/source/tuto_disk/analysis.org
+  docs/source/tuto_disk/analysis.irst
+  docs/source/tuto_disk/CMakeLists.txt
+  docs/source/tuto_disk/Dockerfile
+  docs/source/tuto_disk/fig/edel_read_dhist.png
+  docs/source/tuto_disk/fig/edel_write_dhist.png
+  docs/source/tuto_disk/fig/griffon_deg.png
+  docs/source/tuto_disk/fig/griffon_read_dhist.png
+  docs/source/tuto_disk/fig/griffon_write_dhist.png
+  docs/source/tuto_disk/fig/simgrid_results.png
+  docs/source/tuto_disk/init.el
+  docs/source/tuto_disk/tuto_disk.cpp
+  docs/source/tuto_network_calibration/clustering_ckmeans.ipynb
+  docs/source/tuto_network_calibration/clustering_dhist.ipynb
+  docs/source/tuto_network_calibration/CMakeLists.txt
+  docs/source/tuto_network_calibration/dahu_platform_ckmeans.cpp
+  docs/source/tuto_network_calibration/dahu_platform_dhist.cpp
+  docs/source/tuto_network_calibration/Dockerfile
+  docs/source/tuto_network_calibration/fig/pingpong_real.drawio
+  docs/source/tuto_network_calibration/fig/pingpong_real.png
+  docs/source/tuto_network_calibration/fig/pingpong_simgrid.drawio
+  docs/source/tuto_network_calibration/fig/pingpong_simgrid.png
+  docs/source/tuto_network_calibration/isend_ckmeans.json
+  docs/source/tuto_network_calibration/isend_dhist.json
+  docs/source/tuto_network_calibration/network_calibration_tutorial.ipynb
+  docs/source/tuto_network_calibration/network_calibration_tutorial.rst
+  docs/source/tuto_network_calibration/pingpong_ckmeans.json
+  docs/source/tuto_network_calibration/pingpong_dhist.json
+  docs/source/tuto_network_calibration/plot_ckmeans_PingPong.png
+  docs/source/tuto_network_calibration/plot_dhist_PingPong.png
+  docs/source/tuto_network_calibration/plot_op_average.png
+  docs/source/tuto_network_calibration/plot_op_raw.png
+  docs/source/tuto_network_calibration/plot_op_segmented.png
+  docs/source/tuto_network_calibration/plot_op_simgrid_ckmeans.png
+  docs/source/tuto_network_calibration/plot_op_simgrid_dhist.png
+  docs/source/tuto_network_calibration/recv_ckmeans.json
+  docs/source/tuto_network_calibration/recv_dhist.json
+  docs/source/tuto_network_calibration/send_ckmeans.json
+  docs/source/tuto_network_calibration/send_dhist.json
+  docs/source/tuto_network_calibration/Utils.cpp
+  docs/source/tuto_network_calibration/Utils.hpp
+
+  docs/source/Tutorial_Model-checking.rst
+
   CITATION.bib
   )
 
@@ -988,9 +1042,11 @@ set(txt_files
 # The list of cmake build directories is constructed from the following list.
 # Add your CMakeLists file here to see your subdir built.
 set(CMAKEFILES_TXT
+  examples/platforms/CMakeLists.txt
   examples/c/CMakeLists.txt
   examples/cpp/CMakeLists.txt
   examples/smpi/CMakeLists.txt
+  examples/smpi/comm_dynamic_costs/CMakeLists.txt
   examples/smpi/NAS/CMakeLists.txt
   examples/smpi/smpi_s4u_masterworker/CMakeLists.txt
   examples/smpi/replay_multiple/CMakeLists.txt
@@ -1094,8 +1150,8 @@ set(CMAKE_SOURCE_FILES
   tools/stack-cleaner/clean-stack-filter
   tools/stack-cleaner/compiler-wrapper
   tools/stack-cleaner/README
-  
-  setup.py 
+
+  setup.py
   MANIFEST.in
   MANIFEST.in.in
   )
@@ -1141,6 +1197,7 @@ set(PLATFORMS_EXAMPLES
   examples/platforms/energy_cluster.xml
   examples/platforms/faulty_host.xml
   examples/platforms/g5k.xml
+  examples/platforms/griffon.cpp
   examples/platforms/griffon.xml
   examples/platforms/hosts_with_disks.xml
   examples/platforms/meta_cluster.xml
@@ -1151,6 +1208,7 @@ set(PLATFORMS_EXAMPLES
   examples/platforms/prop.xml
   examples/platforms/routing_cluster.xml
   examples/platforms/routing_cluster.lua
+  examples/platforms/routing_cluster.cpp
   examples/platforms/routing_none.xml
   examples/platforms/simulacrum_7_hosts.xml
   examples/platforms/storage/content/small_content.txt