+
+
+
+/* $Id$ */
+
+
+/* a generic graph library. */
+
+/* Copyright (c) 2006 Darina Dimitrova, Arnaud Legrand.
+ All rights reserved. */
+
+/* This program is free software; you can redistribute it and/or modify it
+ * under the terms of the license (GNU LGPL) which comes with this package. */
+
+#include <stdlib.h>
#include "xbt/sysdep.h"
#include "xbt/log.h"
#include "xbt/graph.h"
#include "graph_private.h"
+#include "xbt/graphxml_parse.h"
+#include "xbt/dict.h"
+
+XBT_LOG_NEW_DEFAULT_SUBCATEGORY(graph, xbt, "Graph");
+
-/* XBT_LOG_NEW_DEFAULT_SUBCATEGORY(graph,xbt,"GRAPH"); */
/** Constructor
* \return a new graph
*/
-xbt_graph_t xbt_graph_new_graph(const char *name, unsigned short int directed,
- void *data)
+xbt_graph_t xbt_graph_new_graph(unsigned short int directed, void *data)
{
- xbt_graph_t graph=NULL;
- graph=xbt_new0(struct xbt_graph,1);
- graph->directed=directed;
- graph->data=data;
- graph->nodes= xbt_dynar_new(sizeof(xbt_node_t), free);
- graph->edges= xbt_dynar_new(sizeof(xbt_edge_t), free);
+ xbt_graph_t graph = NULL;
+ graph = xbt_new0(struct xbt_graph, 1);
+ graph->directed = directed;
+ graph->data = data;
+ graph->nodes = xbt_dynar_new(sizeof(xbt_node_t), NULL);
+ graph->edges = xbt_dynar_new(sizeof(xbt_edge_t), NULL);
return graph;
}
-xbt_node_t xbt_graph_new_node(xbt_graph_t g,const char *name, void *data)
+xbt_node_t xbt_graph_new_node(xbt_graph_t g, void *data)
{
- xbt_node_t node=NULL;
- node=xbt_new0(struct xbt_node,1);
- node->data=data;
- node->in=xbt_dynar_new(sizeof(xbt_node_t), free);
- node->out=xbt_dynar_new(sizeof(xbt_node_t), free);
- xbt_dynar_push(g->nodes,node);
+ xbt_node_t node = NULL;
+ node = xbt_new0(struct xbt_node, 1);
+ node->data = data;
+ node->in = xbt_dynar_new(sizeof(xbt_node_t), NULL);
+ node->out = xbt_dynar_new(sizeof(xbt_node_t), NULL);
+ xbt_dynar_push(g->nodes, &node);
return node;
}
-xbt_edge_t xbt_graph_new_edge(xbt_graph_t g,const char *name,
- xbt_node_t src, xbt_node_t dst, void *data)
+xbt_edge_t xbt_graph_new_edge(xbt_graph_t g,
+ xbt_node_t src, xbt_node_t dst, void *data)
{
- xbt_edge_t edge=NULL;
+ xbt_edge_t edge = NULL;
+
+
+ edge = xbt_new0(struct xbt_edge, 1);
+ xbt_dynar_push(src->out, &edge);
+ xbt_dynar_push(dst->in, &edge);
- edge=xbt_new0(struct xbt_edge,1);
- xbt_dynar_push(src->out,edge);
- xbt_dynar_push(dst->in,edge);
- edge->data=data;
- edge->src=src;
- edge->dst=dst;
- if(!g->directed)
- {
- xbt_dynar_push(src->in,edge);
- xbt_dynar_push(dst->out,edge);
- }
- xbt_dynar_push(g->edges,edge);
+ edge->data = data;
+ edge->src = src;
+ edge->dst = dst;
+ if (!g->directed)
+ {
+ xbt_dynar_push(src->in, &edge);
+ xbt_dynar_push(dst->out, &edge);
+ }
- return edge;
+ xbt_dynar_push(g->edges, &edge);
+
+ return edge;
}
* Free the graph structure.
*/
void xbt_graph_free_graph(xbt_graph_t g,
- void node_free_function(void * ptr),
- void edge_free_function(void * ptr),
- void graph_free_function(void * ptr))
+ void node_free_function(void *ptr),
+ void edge_free_function(void *ptr),
+ void graph_free_function(void *ptr))
{
- int cursor;
- xbt_node_t node=NULL;
- xbt_edge_t edge=NULL;
+ int cursor = 0;
+ xbt_node_t node = NULL;
+ xbt_edge_t edge = NULL;
- xbt_dynar_foreach(g->nodes,cursor,node)
- xbt_graph_remove_node(g,node,node_free_function);
- /* if xbt_dynar_size(g->edges)>0 SCREAM! */
+ xbt_dynar_foreach(g->nodes, cursor, node)
+ {
+ xbt_dynar_free(&(node->out));
+ xbt_dynar_free(&(node->in));
+ if(node_free_function)
+ node_free_function(node->data);
+ }
- xbt_dynar_foreach(g->edges,cursor,edge)
- xbt_graph_remove_edge(g,edge,edge_free_function);
+ xbt_dynar_foreach(g->edges, cursor, edge)
+ {
+ if(edge_free_function)
+ edge_free_function(edge->data);
+ }
+ xbt_dynar_foreach(g->nodes, cursor, node)
+ free(node);
xbt_dynar_free(&(g->nodes));
+
+ xbt_dynar_foreach(g->edges, cursor, edge)
+ free(edge);
xbt_dynar_free(&(g->edges));
-
-/* void xbt_dynar_free(g->edges); */
+ free(g);
return;
}
-void xbt_graph_remove_node(xbt_graph_t g, xbt_node_t n, void free_function(void * ptr))
+
+
+void xbt_graph_free_node(xbt_graph_t g, xbt_node_t n,
+ void_f_pvoid_t * node_free_function,
+ void_f_pvoid_t * edge_free_function)
{
- int cursor;
- xbt_node_t node=NULL;
+ unsigned long nbr;
+ int i;
+ int cursor = 0;
+ xbt_node_t node = NULL;
+ xbt_edge_t edge = NULL;
- if ((free_function)&&(n->data))
- free_function(n->data);
- xbt_dynar_free_container(&(n->in));
- xbt_dynar_free_container(&(n->out));
- xbt_dynar_foreach(g->nodes,cursor,node)
+ nbr = xbt_dynar_length(g->edges);
+ cursor=0;
+ for (i = 0; i < nbr; i++)
{
- if (node==n)
- xbt_dynar_cursor_rm(g->nodes,&cursor);
-
+ xbt_dynar_cursor_get(g->edges, &cursor, &edge);
+
+ if ((edge->dst == n) || (edge->src == n))
+ {
+ xbt_graph_free_edge(g, edge, edge_free_function);
+ }
+ else xbt_dynar_cursor_step( g->edges, &cursor);
}
+
+
+ if ((node_free_function) && (n->data))
+ node_free_function(n->data);
+
+ cursor = 0;
+ xbt_dynar_foreach(g->nodes, cursor, node)
+ {
+ if (node == n)
+ xbt_dynar_cursor_rm(g->nodes, &cursor);
+
+ }
+
return;
-
-}
-void xbt_graph_remove_edge(xbt_graph_t g, xbt_edge_t e, void free_function(void * ptr))
-{
- int cursor=0;
- xbt_edge_t edge=NULL;
- xbt_node_t node=NULL;
- xbt_node_t temp=NULL;
-
- if ((free_function)&&(e->data))
- free_function(e->data);
- xbt_dynar_foreach(g->nodes,cursor,node)
- {
- if (node==e->src)
- xbt_dynar_pop(node->out,temp);
- if (g->directed)
- xbt_dynar_pop(node->in,temp);
-
- }
- node=NULL;
- cursor=0;
- xbt_dynar_foreach(g->nodes,cursor,node)
- {
- if (node==e->dst)
- xbt_dynar_pop(node->in,temp);
- if (g->directed)
- xbt_dynar_pop(node->out,temp);
-
- }
- cursor=0;
- xbt_dynar_foreach(g->edges,cursor,edge)
- if (edge==e)
- {
- xbt_dynar_cursor_rm(g->edges,&cursor);
- break;
- }
-
}
+
+void xbt_graph_free_edge(xbt_graph_t g, xbt_edge_t e,
+ void free_function(void *ptr))
+{
+ int idx;
+ int cursor = 0;
+ xbt_edge_t edge = NULL;
+
+ if ((free_function) && (e->data))
+ free_function(e->data);
+
+ xbt_dynar_foreach(g->edges, cursor, edge)
+ {
+ if (edge == e)
+ {
+ idx = __xbt_find_in_dynar(edge->dst->in,edge);
+ xbt_dynar_remove_at(edge->dst->in, idx,NULL);
+ idx = __xbt_find_in_dynar(edge->src->out,edge);
+ xbt_dynar_remove_at(edge->src->out,idx,NULL);
+ if (!g->directed)
+ {
+ idx = __xbt_find_in_dynar(edge->src->in,edge);
+ xbt_dynar_remove_at(edge->src->in,idx,NULL);
+ idx = __xbt_find_in_dynar(edge->dst->out,edge);
+ xbt_dynar_remove_at(edge->dst->out,idx,NULL);
+ }
+ xbt_dynar_cursor_rm(g->edges, &cursor);
+ free(edge);
+ break;
+ }
+ }
+}
+
+int __xbt_find_in_dynar(xbt_dynar_t dynar, void *p)
+{
+
+ int cursor = 0;
+ void *tmp=NULL;
+
+ xbt_dynar_foreach(dynar, cursor, tmp)
+ {
+ if (tmp == p)
+ return cursor;
+ }
+ return -1;
+}
+
+xbt_dynar_t xbt_graph_get_nodes(xbt_graph_t g)
+{
+ return g->nodes;
+}
+
+xbt_dynar_t xbt_graph_get_edges(xbt_graph_t g)
+{
+ return g->edges;
+}
+
+xbt_node_t xbt_graph_edge_get_source(xbt_edge_t e)
+{
+
+ return e->src;
+}
+
+xbt_node_t xbt_graph_edge_get_target(xbt_edge_t e)
+{
+ return e->dst;
+}
+
+
+void xbt_graph_edge_set_length(xbt_edge_t e, double length)
+{
+ e->length = length;
+
+}
+
+double xbt_graph_edge_get_length(xbt_edge_t e)
+{
+ return e->length;
+}
+
+
+/*construct the adjacency matrix corresponding to a graph,
+ the weights are the distances between nodes
+ */
+double *xbt_graph_get_length_matrix(xbt_graph_t g)
+{
+ int cursor = 0;
+ int in_cursor = 0;
+ int idx,i;
+ unsigned long n;
+ xbt_edge_t edge = NULL;
+ xbt_node_t node=NULL;
+ double *d = NULL;
+
+# define D(u,v) d[(u)*n+(v)]
+ n = xbt_dynar_length(g->nodes);
+
+ d = (double *) xbt_new0(double, n*n);
+
+ for (i = 0; i < n * n; i++)
+ {
+ d[i] = -1.0;
+ }
+
+ xbt_dynar_foreach(g->nodes, cursor, node)
+ {
+ in_cursor = 0;
+ D(cursor, cursor) = 0;
+
+ xbt_dynar_foreach(node->out, in_cursor, edge)
+ {
+ if (edge->dst==node)
+ idx= __xbt_find_in_dynar(g->nodes, edge->src);
+ else /*case of undirected graphs*/
+ idx = __xbt_find_in_dynar(g->nodes, edge->dst);
+ D( cursor,idx) = edge->length;
+ }
+ }
+
+# undef D
+
+ return d;
+}
+
+
+void xbt_floyd_algorithm(xbt_graph_t g, double *adj, double *d,
+ xbt_node_t * p)
+{
+ int i, j, k;
+ unsigned long n;
+ n = xbt_dynar_length(g->nodes);
+
+# define D(u,v) d[(u)*n+(v)]
+# define P(u,v) p[(u)*n+(v)]
+
+ for (i = 0; i < n * n; i++)
+ {
+ d[i] = adj[i];
+ }
+
+
+ for (i = 0; i < n; i++)
+ {
+ for (j = 0; j < n; j++)
+ {
+ if (D(i, j) != -1)
+ {
+ P(i,j) =*((xbt_node_t*) xbt_dynar_get_ptr(g->nodes, i));
+ }
+ }
+ }
+
+ for (k = 0; k < n; k++)
+ {
+ for (i = 0; i < n; i++)
+ {
+ for (j = 0; j < n; j++)
+ {
+ if ((D(i, k) != -1) && (D(k, j) != -1))
+ {
+ if ((D(i, j) == -1) || (D(i, j) > D(i, k) + D(k, j)))
+ {
+ D(i, j) = D(i, k) + D(k, j);
+ P(i, j) = P(k, j);
+ }
+ }
+ }
+ }
+ }
+
+
+
+# undef P
+# undef D
+}
+
+/*computes all-pairs shortest paths*/
+xbt_node_t *xbt_graph_shortest_paths(xbt_graph_t g)
+{
+ xbt_node_t *p;
+ xbt_node_t *r;
+ int i, j, k;
+ unsigned long n;
+
+ double *adj = NULL;
+ double *d = NULL;
+
+# define P(u,v) p[(u)*n+(v)]
+# define R(u,v) r[(u)*n+(v)]
+
+ n = xbt_dynar_length(g->nodes);
+ adj = xbt_graph_get_length_matrix(g);
+ d = xbt_new0(double,n*n);
+ p = xbt_new0(xbt_node_t,n*n);
+ r = xbt_new0(xbt_node_t,n*n);
+
+ xbt_floyd_algorithm(g, adj, d, p);
+
+ for (i = 0; i < n; i++)
+ {
+ for (j = 0; j < n; j++)
+ {
+ k = j;
+
+ while ((P(i, k)) && (__xbt_find_in_dynar(g->nodes, P(i, k)) != i))
+ {
+ k = __xbt_find_in_dynar(g->nodes, P(i, k));
+ }
+
+ if (P(i, j))
+ {
+ R(i, j) = *((xbt_node_t*) xbt_dynar_get_ptr(g->nodes, k));
+ }
+ }
+ }
+# undef R
+# undef P
+
+ free(d);
+ free(p);
+ free(adj);
+ return r;
+}
+
+
+static xbt_graph_t parsed_graph = NULL;
+static xbt_dict_t parsed_nodes = NULL;
+
+
+static void __parse_graph_begin(void)
+{
+ DEBUG0("<graph>");
+}
+static void __parse_graph_end(void)
+{
+ DEBUG0("</graph>");
+}
+
+static void __parse_node(void)
+{
+ xbt_node_t node =
+ xbt_graph_new_node(parsed_graph, (void *) A_graphxml_node_name);
+
+ xbt_dict_set(parsed_nodes, A_graphxml_node_name, (void *) node, NULL);
+
+ DEBUG1("<node label=\"%s\"/>", (char *) (node->data));
+}
+static void __parse_edge(void)
+{
+ xbt_edge_t edge = xbt_graph_new_edge(parsed_graph,
+ xbt_dict_get(parsed_nodes,
+ A_graphxml_edge_source),
+ xbt_dict_get(parsed_nodes,
+ A_graphxml_edge_target),
+ (void *) A_graphxml_edge_name);
+
+ xbt_graph_edge_set_length(edge, atof(A_graphxml_edge_length));
+
+ DEBUG4("<edge name=\"%s\" source=\"%s\" target=\"%s\" length=\"%f\"/>",
+ (char *) edge->data,
+ (char *) (edge->src)->data,
+ (char *) (edge->dst)->data,
+ xbt_graph_edge_get_length(edge));
+}
+
+xbt_graph_t xbt_graph_read(const char *filename)
+{
+ xbt_graph_t graph = xbt_graph_new_graph(1, NULL);
+
+ parsed_graph = graph;
+ parsed_nodes = xbt_dict_new();
+
+
+ xbt_graph_parse_reset_parser();
+
+ STag_graphxml_graph_fun = __parse_graph_begin;
+ ETag_graphxml_graph_fun = __parse_graph_end;
+ ETag_graphxml_node_fun = __parse_node;
+ ETag_graphxml_edge_fun = __parse_edge;
+
+
+ xbt_graph_parse_open(filename);
+ xbt_assert1((!xbt_graph_parse()), "Parse error in %s", filename);
+ xbt_graph_parse_close();
+
+ xbt_dict_free(&parsed_nodes);
+
+ parsed_graph = NULL;
+ return graph;
+}
+
+void xbt_graph_export_graphxml(xbt_graph_t g, const char *filename,
+ const char *(node_name) (xbt_node_t),
+ const char *(edge_name) (xbt_edge_t))
+{
+ int cursor = 0;
+ xbt_node_t node = NULL;
+ xbt_edge_t edge = NULL;
+ FILE *file = NULL;
+ const char *name=NULL;
+
+ file=fopen(filename,"w");
+ xbt_assert1(file, "Failed to open %s \n",filename);
+
+ fprintf(file,"graph test {\n");
+ fprintf(file," graph [overlap=scale]\n");
+
+ fprintf(file," node [shape=box, style=filled]\n");
+ fprintf(file," node [width=.3, height=.3, style=filled, color=skyblue]\n\n");
+
+ xbt_dynar_foreach(g->nodes, cursor, node) {
+ fprintf(file," %p ", node);
+ if((node_name)&&((name=node_name(node)))) fprintf(file,"[label=\"%s\"]",name);
+ fprintf(file,";\n");
+ }
+ xbt_dynar_foreach(g->edges, cursor, edge) {
+ fprintf(file," %p -- %p",edge->src, edge->dst);
+ if((edge_name)&&((name=edge_name(edge)))) fprintf(file,"[label=\"%s\"]",name);
+ fprintf(file,";\n");
+ }
+ fprintf(file,"}\n");
+ fclose(file);
+}
+
+void xbt_graph_export_graphviz(xbt_graph_t g, const char *filename,
+ const char *(node_name)(xbt_node_t),
+ const char *(edge_name)(xbt_edge_t))
+{
+ int cursor = 0;
+ xbt_node_t node = NULL;
+ xbt_edge_t edge = NULL;
+ FILE *file = NULL;
+ const char *name = NULL;
+
+ file=fopen(filename,"w");
+ xbt_assert1(file, "Failed to open %s \n",filename);
+
+ fprintf(file,"<?xml version='1.0'?>\n");
+ fprintf(file,"<!DOCTYPE graph SYSTEM \"graphxml.dtd\">\n");
+ fprintf(file,"<graph>\n");
+ xbt_dynar_foreach(g->nodes, cursor, node) {
+ fprintf(file," <node name=\"%p\" ", node);
+ if((node_name)&&((name=node_name(node)))) fprintf(file,"label=\"%s\" ",name);
+ fprintf(file,">\n");
+ }
+ xbt_dynar_foreach(g->edges, cursor, edge) {
+ fprintf(file," <edge source=\"%p\" target =\"%p\" ",
+ edge->src, edge->dst );
+ if((edge_name)&&((name=edge_name(edge)))) fprintf(file,"label=\"%s\" ",name);
+ fprintf(file,">\n");
+ }
+ fprintf(file,"</graph>\n");
+ fclose(file);
+}
+
