-set(CMAKE_LINKARGS "${CMAKE_CURRENT_BINARY_DIR}/lib")
-set(CMAKE_SMPI_COMMAND "export LD_LIBRARY_PATH=${CMAKE_CURRENT_BINARY_DIR}/lib:${GTNETS_LIB_PATH}:$LD_LIBRARY_PATH")
-
-configure_file(${CMAKE_HOME_DIRECTORY}/src/smpi/smpicc.in ${CMAKE_CURRENT_BINARY_DIR}/bin/smpicc @ONLY)
-configure_file(${CMAKE_HOME_DIRECTORY}/src/smpi/smpif2c.in ${CMAKE_CURRENT_BINARY_DIR}/bin/smpif2c @ONLY)
-configure_file(${CMAKE_HOME_DIRECTORY}/src/smpi/smpiff.in ${CMAKE_CURRENT_BINARY_DIR}/bin/smpiff @ONLY)
-configure_file(${CMAKE_HOME_DIRECTORY}/src/smpi/smpirun.in ${CMAKE_CURRENT_BINARY_DIR}/bin/smpirun @ONLY)
-configure_file(${CMAKE_HOME_DIRECTORY}/examples/smpi/hostfile ${CMAKE_CURRENT_BINARY_DIR}/examples/smpi/hostfile COPYONLY)
-configure_file(${CMAKE_HOME_DIRECTORY}/examples/msg/small_platform.xml ${CMAKE_CURRENT_BINARY_DIR}/examples/msg/small_platform.xml COPYONLY)
-configure_file(${CMAKE_HOME_DIRECTORY}/examples/msg/small_platform_with_routers.xml ${CMAKE_CURRENT_BINARY_DIR}/examples/msg/small_platform_with_routers.xml COPYONLY)
-
-exec_program("chmod a=rwx ${CMAKE_CURRENT_BINARY_DIR}/bin/smpicc" OUTPUT_VARIABLE OKITOKI)
-exec_program("chmod a=rwx ${CMAKE_CURRENT_BINARY_DIR}/bin/smpif2c" OUTPUT_VARIABLE OKITOKI)
-exec_program("chmod a=rwx ${CMAKE_CURRENT_BINARY_DIR}/bin/smpiff" OUTPUT_VARIABLE OKITOKI)
-exec_program("chmod a=rwx ${CMAKE_CURRENT_BINARY_DIR}/bin/smpirun" OUTPUT_VARIABLE OKITOKI)
-
-set(generate_files_to_clean
-${CMAKE_CURRENT_BINARY_DIR}/src/context_sysv_config.h
-${CMAKE_CURRENT_BINARY_DIR}/src/gras_config.h
-${CMAKE_CURRENT_BINARY_DIR}/include/simgrid_config.h
-${CMAKE_CURRENT_BINARY_DIR}/bin/smpicc
-${CMAKE_CURRENT_BINARY_DIR}/bin/smpif2c
-${CMAKE_CURRENT_BINARY_DIR}/bin/smpiff
-${CMAKE_CURRENT_BINARY_DIR}/bin/smpirun
-${CMAKE_CURRENT_BINARY_DIR}/bin/colorize
-${CMAKE_CURRENT_BINARY_DIR}/bin/simgrid_update_xml
-${CMAKE_CURRENT_BINARY_DIR}/examples/smpi/hostfile
-${CMAKE_CURRENT_BINARY_DIR}/examples/smpi/smpi_traced.trace
-${CMAKE_CURRENT_BINARY_DIR}/examples/msg/small_platform.xml
-${CMAKE_CURRENT_BINARY_DIR}/examples/msg/small_platform_with_routers.xml
-)
+set(CMAKE_SMPI_COMMAND "export LD_LIBRARY_PATH=${CMAKE_INSTALL_PREFIX}/lib:${GTNETS_LIB_PATH}:${HAVE_NS3_LIB}:$LD_LIBRARY_PATH")
+
+configure_file(${CMAKE_HOME_DIRECTORY}/include/smpi/smpif.h.in ${CMAKE_BINARY_DIR}/include/smpi/smpif.h @ONLY)
+configure_file(${CMAKE_HOME_DIRECTORY}/src/smpi/smpicc.in ${CMAKE_BINARY_DIR}/bin/smpicc @ONLY)
+configure_file(${CMAKE_HOME_DIRECTORY}/src/smpi/smpif2c.in ${CMAKE_BINARY_DIR}/bin/smpif2c @ONLY)
+configure_file(${CMAKE_HOME_DIRECTORY}/src/smpi/smpiff.in ${CMAKE_BINARY_DIR}/bin/smpiff @ONLY)
+configure_file(${CMAKE_HOME_DIRECTORY}/src/smpi/smpirun.in ${CMAKE_BINARY_DIR}/bin/smpirun @ONLY)
+
+### Script used when simgrid is compiling
+set(includeflag "-I${CMAKE_HOME_DIRECTORY}/include -I${CMAKE_HOME_DIRECTORY}/include/smpi")
+set(includeflag "${includeflag} -I${CMAKE_BINARY_DIR}/include -I${CMAKE_BINARY_DIR}/include/smpi")
+set(includedir "${CMAKE_HOME_DIRECTORY}/include")
+set(exec_prefix "${CMAKE_BINARY_DIR}/smpi_script/")
+set(CMAKE_SMPI_COMMAND "export LD_LIBRARY_PATH=${CMAKE_BINARY_DIR}/lib:${GTNETS_LIB_PATH}:${HAVE_NS3_LIB}:$LD_LIBRARY_PATH")
+set(libdir "${CMAKE_BINARY_DIR}/lib")
+
+configure_file(${CMAKE_HOME_DIRECTORY}/src/smpi/smpicc.in ${CMAKE_BINARY_DIR}/smpi_script/bin/smpicc @ONLY)
+configure_file(${CMAKE_HOME_DIRECTORY}/src/smpi/smpif2c.in ${CMAKE_BINARY_DIR}/smpi_script/bin/smpif2c @ONLY)
+configure_file(${CMAKE_HOME_DIRECTORY}/src/smpi/smpiff.in ${CMAKE_BINARY_DIR}/smpi_script/bin/smpiff @ONLY)
+configure_file(${CMAKE_HOME_DIRECTORY}/src/smpi/smpirun.in ${CMAKE_BINARY_DIR}/smpi_script/bin/smpirun @ONLY)
+
+set(top_builddir ${CMAKE_HOME_DIRECTORY})
+
+if(NOT WIN32)
+ execute_process(COMMAND chmod a=rwx ${CMAKE_BINARY_DIR}/bin/smpicc)
+ execute_process(COMMAND chmod a=rwx ${CMAKE_BINARY_DIR}/bin/smpif2c)
+ execute_process(COMMAND chmod a=rwx ${CMAKE_BINARY_DIR}/bin/smpiff)
+ execute_process(COMMAND chmod a=rwx ${CMAKE_BINARY_DIR}/bin/smpirun)
+ execute_process(COMMAND chmod a=rwx ${CMAKE_BINARY_DIR}/smpi_script/bin/smpicc)
+ execute_process(COMMAND chmod a=rwx ${CMAKE_BINARY_DIR}/smpi_script/bin/smpif2c)
+ execute_process(COMMAND chmod a=rwx ${CMAKE_BINARY_DIR}/smpi_script/bin/smpiff)
+ execute_process(COMMAND chmod a=rwx ${CMAKE_BINARY_DIR}/smpi_script/bin/smpirun)
+endif()
+
+set(generated_headers_to_install
+ ${CMAKE_CURRENT_BINARY_DIR}/include/smpi/smpif.h
+ ${CMAKE_CURRENT_BINARY_DIR}/include/simgrid_config.h
+ )
+
+set(generated_headers
+ ${CMAKE_CURRENT_BINARY_DIR}/src/context_sysv_config.h
+ ${CMAKE_CURRENT_BINARY_DIR}/src/internal_config.h
+ )
+
+set(generated_files_to_clean
+ ${generated_headers}
+ ${generated_headers_to_install}
+ ${CMAKE_BINARY_DIR}/bin/smpicc
+ ${CMAKE_BINARY_DIR}/bin/smpif2c
+ ${CMAKE_BINARY_DIR}/bin/smpiff
+ ${CMAKE_BINARY_DIR}/bin/smpirun
+ ${CMAKE_BINARY_DIR}/bin/colorize
+ ${CMAKE_BINARY_DIR}/bin/simgrid_update_xml
+ ${CMAKE_BINARY_DIR}/examples/smpi/tracing/smpi_traced.trace
+ ${CMAKE_BINARY_DIR}/src/supernovae_sg.c
+ ${CMAKE_BINARY_DIR}/src/supernovae_smpi.c
+ )
+
+if("${CMAKE_BINARY_DIR}" STREQUAL "${CMAKE_HOME_DIRECTORY}")
+else()
+ configure_file(${CMAKE_HOME_DIRECTORY}/examples/smpi/hostfile ${CMAKE_BINARY_DIR}/examples/smpi/hostfile COPYONLY)
+ configure_file(${CMAKE_HOME_DIRECTORY}/examples/msg/small_platform.xml ${CMAKE_BINARY_DIR}/examples/msg/small_platform.xml COPYONLY)
+ configure_file(${CMAKE_HOME_DIRECTORY}/examples/msg/small_platform_with_routers.xml ${CMAKE_BINARY_DIR}/examples/msg/small_platform_with_routers.xml COPYONLY)
+ configure_file(${CMAKE_HOME_DIRECTORY}/examples/msg/tracing/platform.xml ${CMAKE_BINARY_DIR}/examples/msg/tracing/platform.xml COPYONLY)
+ configure_file(${CMAKE_HOME_DIRECTORY}/examples/smpi/replay/actions0.txt ${CMAKE_BINARY_DIR}/examples/smpi/replay/actions0.txt COPYONLY)
+ configure_file(${CMAKE_HOME_DIRECTORY}/examples/smpi/replay/actions1.txt ${CMAKE_BINARY_DIR}/examples/smpi/replay/actions1.txt COPYONLY)
+ configure_file(${CMAKE_HOME_DIRECTORY}/examples/smpi/replay/actions_bcast.txt ${CMAKE_BINARY_DIR}/examples/smpi/replay/actions_bcast.txt COPYONLY)
+ configure_file(${CMAKE_HOME_DIRECTORY}/teshsuite/smpi/hostfile ${CMAKE_BINARY_DIR}/teshsuite/smpi/hostfile COPYONLY)
+
+ set(generated_files_to_clean
+ ${generated_files_to_clean}
+ ${CMAKE_BINARY_DIR}/examples/smpi/hostfile
+ ${CMAKE_BINARY_DIR}/examples/msg/small_platform.xml
+ ${CMAKE_BINARY_DIR}/examples/msg/small_platform_with_routers.xml
+ ${CMAKE_BINARY_DIR}/examples/msg/tracing/platform.xml
+ ${CMAKE_BINARY_DIR}/examples/smpi/replay/actions0.txt
+ ${CMAKE_BINARY_DIR}/examples/smpi/replay/actions1.txt
+ ${CMAKE_BINARY_DIR}/examples/smpi/replay/actions_bcast.txt
+ ${CMAKE_BINARY_DIR}/teshsuite/smpi/hostfile
+ )
+endif()