Merge commit '045db1657e870c721be490b411868f4181a12ced' into surf++

[simgrid.git] / buildtools / Cmake / DefinePackages.cmake

diff --git a/buildtools/Cmake/DefinePackages.cmake b/buildtools/Cmake/DefinePackages.cmake
index 5e4aa95..cdef08e 100644 (file)
--- a/buildtools/Cmake/DefinePackages.cmake
+++ b/buildtools/Cmake/DefinePackages.cmake
@@ -41,14 +41,20 @@ set(EXTRA_DIST
   src/smpi/colls/coll_tuned_topo.h
   src/smpi/private.h
   src/smpi/smpi_mpi_dt_private.h
+  src/surf/cpu.hpp
+  src/surf/cpu_ti.hpp
+  src/surf/cpu_cas01.hpp
   src/surf/cpu_ti_private.h
   src/surf/gtnets/gtnets_interface.h
   src/surf/gtnets/gtnets_simulator.h
   src/surf/gtnets/gtnets_topology.h
   src/surf/maxmin_private.h
-  src/surf/network_gtnets_private.h
+  src/surf/network_gtnets.hpp
   src/surf/network_ns3_private.h
   src/surf/network_private.h
+  src/surf/network.hpp
+  src/surf/network_smpi.hpp
+  src/surf/network_constant.hpp
   src/surf/ns3/my-point-to-point-helper.h
   src/surf/ns3/ns3_interface.h
   src/surf/ns3/ns3_simulator.h
@@ -56,11 +62,24 @@ set(EXTRA_DIST
   src/surf/platf_generator_private.h
   src/surf/simgrid.dtd
   src/surf/simgrid_dtd.c
+  src/surf/storage.hpp
   src/surf/storage_private.h
+  src/surf/surf.hpp
   src/surf/surf_private.h
   src/surf/surf_routing_private.h
+  src/surf/surf_routing_private.hpp
+  src/surf/surf_routing.hpp
+  src/surf/surf_routing_cluster.hpp
+  src/surf/surf_routing_dijkstra.hpp
+  src/surf/surf_routing_floyd.hpp
+  src/surf/surf_routing_full.hpp
+  src/surf/surf_routing_generic.hpp
+  src/surf/surf_routing_none.hpp
+  src/surf/surf_routing_vivaldi.hpp
   src/surf/surfxml_parse.c
   src/surf/trace_mgr_private.h
+  src/surf/workstation.hpp
+  src/surf/workstation_ptask_L07.hpp
   src/win32/config.h
   src/xbt/automaton/automaton_lexer.yy.c
   src/xbt/automaton/parserPromela.lex
@@ -112,13 +131,13 @@ set(SMPI_SRC
   src/smpi/smpi_pmpi.c
   src/smpi/smpi_replay.c
   src/smpi/colls/smpi_openmpi_selector.c
+  src/smpi/colls/smpi_mpich_selector.c
   src/smpi/colls/colls_global.c
   src/smpi/colls/allgather-2dmesh.c
   src/smpi/colls/allgather-3dmesh.c
   src/smpi/colls/allgather-bruck.c
   src/smpi/colls/allgather-GB.c
   src/smpi/colls/allgather-loosely-lr.c
-  src/smpi/colls/allgather-lr.c
   src/smpi/colls/allgather-NTSLR.c
   src/smpi/colls/allgather-NTSLR-NB.c
   src/smpi/colls/allgather-pair.c
@@ -133,13 +152,13 @@ set(SMPI_SRC
   src/smpi/colls/allgatherv-pair.c
   src/smpi/colls/allgatherv-ring.c
   src/smpi/colls/allgatherv-ompi-neighborexchange.c
+  src/smpi/colls/allgatherv-ompi-bruck.c
+  src/smpi/colls/allgatherv-mpich-rdb.c
+  src/smpi/colls/allgatherv-mpich-ring.c
   src/smpi/colls/allreduce-lr.c
-  src/smpi/colls/allreduce-NTS.c
   src/smpi/colls/allreduce-rab1.c
   src/smpi/colls/allreduce-rab2.c
   src/smpi/colls/allreduce-rab-rdb.c
-  #src/smpi/colls/allreduce-rab-reduce-scatter.c
-  src/smpi/colls/allreduce-rab-rsag.c
   src/smpi/colls/allreduce-rdb.c
   src/smpi/colls/allreduce-redbcast.c
   src/smpi/colls/allreduce-smp-binomial.c
@@ -151,7 +170,7 @@ set(SMPI_SRC
   src/smpi/colls/allreduce-ompi-ring-segmented.c
   src/smpi/colls/alltoall-2dmesh.c
   src/smpi/colls/alltoall-3dmesh.c
-  #src/smpi/colls/alltoall-bruck.c
+#  src/smpi/colls/alltoall-bruck.c
   src/smpi/colls/alltoall-pair.c
   src/smpi/colls/alltoall-pair-light-barrier.c
   src/smpi/colls/alltoall-pair-mpi-barrier.c
@@ -161,7 +180,6 @@ set(SMPI_SRC
   src/smpi/colls/alltoall-ring-light-barrier.c
   src/smpi/colls/alltoall-ring-mpi-barrier.c
   src/smpi/colls/alltoall-ring-one-barrier.c
-  src/smpi/colls/alltoall-simple.c
   src/smpi/colls/alltoallv-pair.c   
   src/smpi/colls/alltoallv-pair-light-barrier.c
   src/smpi/colls/alltoallv-pair-mpi-barrier.c
@@ -171,7 +189,7 @@ set(SMPI_SRC
   src/smpi/colls/alltoallv-ring-mpi-barrier.c
   src/smpi/colls/alltoallv-ring-one-barrier.c
   src/smpi/colls/alltoallv-bruck.c
-  src/smpi/colls/bcast-arrival-nb.c
+  src/smpi/colls/alltoallv-ompi-basic-linear.c
   src/smpi/colls/bcast-arrival-pattern-aware.c
   src/smpi/colls/bcast-arrival-pattern-aware-wait.c
   src/smpi/colls/bcast-arrival-scatter.c
@@ -196,6 +214,11 @@ set(SMPI_SRC
   src/smpi/colls/reduce-scatter-gather.c
   src/smpi/colls/reduce-ompi.c
   src/smpi/colls/gather-ompi.c
+  src/smpi/colls/reduce_scatter-ompi.c
+  src/smpi/colls/reduce_scatter-mpich.c
+  src/smpi/colls/smpi_automatic_selector.c
+  src/smpi/colls/scatter-ompi.c
+  src/smpi/colls/barrier-ompi.c
   )
 
 if(SMPI_F2C)
@@ -263,7 +286,7 @@ set(GTNETS_SRC
   src/surf/gtnets/gtnets_interface.cc
   src/surf/gtnets/gtnets_simulator.cc
   src/surf/gtnets/gtnets_topology.cc
-  src/surf/network_gtnets.c
+  src/surf/network_gtnets.cpp
   )
 
 set(NS3_SRC
@@ -275,35 +298,36 @@ set(NS3_SRC
   )
 
 set(SURF_SRC
-  src/surf/cpu_cas01.c
-  src/surf/cpu_ti.c
+  src/surf/cpu.cpp
+  src/surf/cpu_ti.cpp
+  src/surf/cpu_cas01.cpp
   src/surf/fair_bottleneck.c
   src/surf/instr_routing.c
   src/surf/instr_surf.c
   src/surf/lagrange.c
   src/surf/maxmin.c
-  src/surf/network.c
-  src/surf/network_constant.c
+  src/surf/network.cpp
+  src/surf/network_smpi.cpp  
+  src/surf/network_constant.cpp
   src/surf/platf_generator.c
   src/surf/random_mgr.c
   src/surf/sg_platf.c
-  src/surf/storage.c
-  src/surf/surf.c
-  src/surf/surf_action.c
-  src/surf/surf_model.c
-  src/surf/surf_routing.c
-  src/surf/surf_routing_cluster.c
-  src/surf/surf_routing_dijkstra.c
-  src/surf/surf_routing_floyd.c
-  src/surf/surf_routing_full.c
-  src/surf/surf_routing_generic.c
-  src/surf/surf_routing_none.c
-  src/surf/surf_routing_vivaldi.c
+  src/surf/storage.cpp
+  src/surf/surf.cpp
+  src/surf/surf_interface.cpp
+  src/surf/surf_routing.cpp  
+  src/surf/surf_routing_cluster.cpp
+  src/surf/surf_routing_dijkstra.cpp
+  src/surf/surf_routing_floyd.cpp
+  src/surf/surf_routing_full.cpp
+  src/surf/surf_routing_generic.cpp
+  src/surf/surf_routing_none.cpp
+  src/surf/surf_routing_vivaldi.cpp
   src/surf/surfxml_parse.c
   src/surf/surfxml_parseplatf.c
   src/surf/trace_mgr.c
-  src/surf/workstation.c
-  src/surf/workstation_ptask_L07.c
+  src/surf/workstation.cpp
+  src/surf/workstation_ptask_L07.cpp
   src/xbt/xbt_sg_stubs.c
   )
 
@@ -367,11 +391,9 @@ set(SIMIX_SRC
 
 set(SURF_SRC
   ${SURF_SRC}
-  src/surf/new_model.c
   )
 set(EXTRA_DIST
   ${EXTRA_DIST}
-  src/surf/new_model_private.h
   )
 #* ****************************************************************************************** *#
 
@@ -404,6 +426,8 @@ set(BINDINGS_SRC
 set(JMSG_C_SRC
   src/bindings/java/jmsg.c
   src/bindings/java/jmsg.h
+  src/bindings/java/jmsg_as.c
+  src/bindings/java/jmsg_as.h
   src/bindings/java/jmsg_comm.c
   src/bindings/java/jmsg_comm.h
   src/bindings/java/jmsg_file.c
@@ -429,6 +453,7 @@ set(JMSG_C_SRC
 )
 
 set(JMSG_JAVA_SRC
+  src/bindings/java/org/simgrid/msg/As.java    
   src/bindings/java/org/simgrid/msg/Comm.java
   src/bindings/java/org/simgrid/msg/File.java
   src/bindings/java/org/simgrid/msg/Host.java
@@ -527,7 +552,6 @@ set(headers_to_install
   include/simgrid/platf_generator.h
   include/simgrid/simix.h
   include/smpi/mpi.h
-  include/smpi/mpif.h
   include/smpi/smpi.h
   include/smpi/smpi_cocci.h
   include/smpi/smpi_main.h
@@ -573,6 +597,7 @@ set(headers_to_install
   )
 set(source_of_generated_headers
   include/simgrid_config.h.in
+  include/smpi/mpif.h.in
   include/smpi/smpif.h.in
   src/context_sysv_config.h.in)
 
@@ -697,7 +722,6 @@ else()
 endif()
 
 set(DOC_SOURCES
-  doc/AS_hierarchy.png
   doc/Doxyfile.in
   doc/Layout.xml
   doc/sg_thread_model.fig
@@ -762,6 +786,8 @@ set(DOC_SOURCES
   doc/msg-tuto-src/platforms/griffon.xml
   doc/msg-tuto-src/platforms/peers.xml
   doc/msg-tuto-src/platforms/platform.xml
+  
+  CITATION.bib
   )
 
 set(DOC_FIGS
@@ -779,6 +805,7 @@ set(DOC_TOOLS
 set(DOC_IMG
   ${CMAKE_HOME_DIRECTORY}/doc/simgrid.css
   ${CMAKE_HOME_DIRECTORY}/doc/sc3-description.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/AS_hierarchy.png
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/Paje_MSG_screenshot.jpg
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/Paje_MSG_screenshot_thn.jpg
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/SGicon.gif
@@ -798,6 +825,8 @@ set(DOC_IMG
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_04.png
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_05.png
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_06.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/smpi_simgrid_alltoall_pair_16.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/smpi_simgrid_alltoall_ring_16.png
   )
 
 set(bin_files
@@ -850,6 +879,9 @@ set(EXAMPLES_CMAKEFILES_TXT
   examples/msg/chainsend/CMakeLists.txt
   examples/msg/chord/CMakeLists.txt
   examples/msg/cloud/CMakeLists.txt
+  examples/msg/energy/e1/CMakeLists.txt
+  examples/msg/energy/e2/CMakeLists.txt
+  examples/msg/energy/e3/CMakeLists.txt
   examples/msg/gpu/CMakeLists.txt
   examples/msg/gtnets/CMakeLists.txt
   examples/msg/icomms/CMakeLists.txt
@@ -860,9 +892,11 @@ set(EXAMPLES_CMAKEFILES_TXT
   examples/msg/migration/CMakeLists.txt
   examples/msg/ns3/CMakeLists.txt
   examples/msg/parallel_task/CMakeLists.txt
+  examples/msg/pastry/CMakeLists.txt
   examples/msg/pmm/CMakeLists.txt
   examples/msg/priority/CMakeLists.txt
   examples/msg/properties/CMakeLists.txt
+  examples/msg/semaphores/CMakeLists.txt
   examples/msg/sendrecv/CMakeLists.txt
   examples/msg/start_kill_time/CMakeLists.txt
   examples/msg/suspend/CMakeLists.txt
@@ -876,6 +910,7 @@ set(EXAMPLES_CMAKEFILES_TXT
   examples/simdag/dax/CMakeLists.txt
   examples/simdag/dot/CMakeLists.txt
   examples/simdag/goal/CMakeLists.txt
+  examples/simdag/io/CMakeLists.txt
   examples/simdag/metaxml/CMakeLists.txt
   examples/simdag/properties/CMakeLists.txt
   examples/simdag/scheduling/CMakeLists.txt
@@ -885,8 +920,8 @@ set(EXAMPLES_CMAKEFILES_TXT
   )
 
 set(TESHSUITE_CMAKEFILES_TXT
-  teshsuite/CMakeLists.txt
   teshsuite/msg/CMakeLists.txt
+  teshsuite/msg/storage/CMakeLists.txt
   teshsuite/msg/trace/CMakeLists.txt
   teshsuite/simdag/CMakeLists.txt
   teshsuite/simdag/availability/CMakeLists.txt
@@ -895,13 +930,27 @@ set(TESHSUITE_CMAKEFILES_TXT
   teshsuite/simdag/network/p2p/CMakeLists.txt
   teshsuite/simdag/partask/CMakeLists.txt
   teshsuite/simdag/platforms/CMakeLists.txt
+  teshsuite/simix/CMakeLists.txt
   teshsuite/smpi/CMakeLists.txt
-  teshsuite/smpi/mpich-test/CMakeLists.txt
-  teshsuite/smpi/mpich-test/coll/CMakeLists.txt
-  teshsuite/smpi/mpich-test/context/CMakeLists.txt
-  teshsuite/smpi/mpich-test/env/CMakeLists.txt
-  teshsuite/smpi/mpich-test/profile/CMakeLists.txt
-  teshsuite/smpi/mpich-test/pt2pt/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/attr/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/comm/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/coll/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/datatype/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/group/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/init/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/pt2pt/CMakeLists.txt
+#  teshsuite/smpi/mpich3-test/f77/attr/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/coll/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/comm/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/datatype/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/ext/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/init/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/pt2pt/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f90/coll/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f90/datatype/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f90/init/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f90/pt2pt/CMakeLists.txt
   teshsuite/xbt/CMakeLists.txt
   )
 
@@ -990,6 +1039,7 @@ set(PLATFORMS_EXAMPLES
   examples/platforms/conf/transform_optorsim_platform.pl
   examples/platforms/config.xml
   examples/platforms/content/storage_content.txt
+  examples/platforms/content/win_storage_content.txt
   examples/platforms/data_center.xml
   examples/platforms/g5k.xml
   examples/platforms/generation_scripts/create_hierarchical_clusters.pl