It appears to work correclty this way (locally at least).
doc/html
doc/index-API.doc
doc/index.php
+doc/logcategories.doc
doc/simgrid.tag
doc/simgrid_modules.map
doc/publis_core.bib
#doc/index-API.doc
doc/index.doc
+ ${CMAKE_HOME_DIRECTORY}/doc/logcategories.doc
doc/module-amok.doc
doc/module-gras.doc
doc/module-msg.doc
gtut-tour-16-exchangecb.doc \
gtut-howto.doc \
gtut-howto-design.doc \
+ @top_srcdir@/doc/logcategories.doc \
@top_srcdir@/src/instr/ \
@top_srcdir@/include/ \
@top_srcdir@/include/msg \