X-Git-Url: http://info.iut-bm.univ-fcomte.fr/pub/gitweb/simgrid.git/blobdiff_plain/cf75523de37862d1f4eddaa1cbdd276f20755fea..55b3e236db71d2245c71ff1ea3cbec120a0e0d8d:/tools/cmake/DefinePackages.cmake

diff --git a/tools/cmake/DefinePackages.cmake b/tools/cmake/DefinePackages.cmake
index 87bdcd2cf7..13409f27c6 100644
--- a/tools/cmake/DefinePackages.cmake
+++ b/tools/cmake/DefinePackages.cmake
@@ -10,6 +10,7 @@ set(EXTRA_DIST
   src/mc/mc_record.h
   src/include/simgrid/sg_config.h
   src/include/smpi/smpi_interface.h
+  src/include/smpi/smpi_utils.hpp
   src/include/surf/datatypes.h
   src/include/surf/maxmin.h
   src/include/surf/surf.h
@@ -17,7 +18,7 @@ set(EXTRA_DIST
   src/simdag/dax.dtd
   src/simdag/dax_dtd.c
   src/simdag/dax_dtd.h
-  src/simdag/simdag_private.h
+  src/simdag/simdag_private.hpp
   src/simix/simcalls.in
   src/simix/simcalls.py
   src/simix/popping_private.h
@@ -29,15 +30,13 @@ set(EXTRA_DIST
   src/simix/smx_io_private.h
   src/simix/smx_network_private.h
   src/simix/smx_private.h
-  src/simix/smx_process_private.h
   src/simix/smx_synchro_private.h
-  src/simix/Synchro.h
-  src/simix/SynchroComm.hpp
-  src/simix/SynchroExec.hpp
-  src/simix/SynchroIo.hpp
-  src/simix/SynchroSleep.hpp
-  src/simix/SynchroRaw.hpp
-  src/smpi/README
+  src/kernel/activity/ActivityImpl.hpp
+  src/kernel/activity/SynchroComm.hpp
+  src/kernel/activity/SynchroExec.hpp
+  src/kernel/activity/SynchroIo.hpp
+  src/kernel/activity/SynchroSleep.hpp
+  src/kernel/activity/SynchroRaw.hpp
   src/smpi/colls/coll_tuned_topo.h
   src/smpi/colls/colls.h
   src/smpi/colls/colls_private.h
@@ -57,32 +56,16 @@ set(EXTRA_DIST
   src/surf/network_ib.hpp
   src/surf/ns3/ns3_interface.h
   src/surf/ns3/ns3_simulator.h
-  src/surf/plugins/energy.hpp
   src/surf/xml/simgrid.dtd
   src/surf/xml/simgrid_dtd.h
   src/surf/xml/simgrid_dtd.c
   src/surf/xml/surfxml_sax_cb.cpp
 
-  src/surf/AsImpl.hpp
-  src/surf/AsCluster.hpp
-  src/surf/AsClusterFatTree.hpp
-  src/surf/AsClusterTorus.hpp
-  src/surf/AsClusterDragonfly.hpp
-  src/surf/AsDijkstra.hpp
-  src/surf/AsFloyd.hpp
-  src/surf/AsFull.hpp
-  src/surf/AsRoutedGraph.hpp
-  src/surf/AsNone.hpp
-  src/surf/AsVivaldi.hpp
-
   src/surf/storage_interface.hpp
   src/surf/storage_n11.hpp
   src/surf/surf_interface.hpp
   src/surf/surf_private.h
-  src/surf/surf_routing.hpp
-  src/surf/vm_hl13.hpp
   src/surf/PropertyHolder.hpp
-  src/surf/virtual_machine.hpp
   src/surf/host_clm03.hpp
   src/surf/HostImpl.hpp
   src/surf/ptask_L07.hpp
@@ -95,7 +78,6 @@ set(EXTRA_DIST
   src/xbt/backtrace_linux.cpp
   src/xbt/dict_private.h
   src/xbt/ex_interface.h
-  src/xbt/fifo_private.h
   src/xbt/graph_private.h
   src/xbt/heap_private.h
   src/xbt/log_private.h
@@ -116,129 +98,139 @@ set(EXTRA_DIST
   teshsuite/lua/lua_platforms.tesh
   examples/smpi/mc/only_send_deterministic.tesh
   examples/smpi/mc/non_deterministic.tesh
+  
+  examples/java/.classpath
+  examples/java/.project
   )
 
 set(SMPI_SRC
-  src/smpi/colls/allgather-2dmesh.c
-  src/smpi/colls/allgather-3dmesh.c
-  src/smpi/colls/allgather-GB.c
-  src/smpi/colls/allgather-NTSLR-NB.c
-  src/smpi/colls/allgather-NTSLR.c
-  src/smpi/colls/allgather-SMP-NTS.c
-  src/smpi/colls/allgather-bruck.c
-  src/smpi/colls/allgather-loosely-lr.c
-  src/smpi/colls/allgather-ompi-neighborexchange.c
-  src/smpi/colls/allgather-pair.c
-  src/smpi/colls/allgather-mvapich-smp.c
-  src/smpi/colls/allgather-rdb.c
-  src/smpi/colls/allgather-rhv.c
-  src/smpi/colls/allgather-ring.c
-  src/smpi/colls/allgather-smp-simple.c
-  src/smpi/colls/allgather-spreading-simple.c
-  src/smpi/colls/allgatherv-GB.c
-  src/smpi/colls/allgatherv-mpich-rdb.c
-  src/smpi/colls/allgatherv-mpich-ring.c
-  src/smpi/colls/allgatherv-ompi-bruck.c
-  src/smpi/colls/allgatherv-ompi-neighborexchange.c
-  src/smpi/colls/allgatherv-pair.c
-  src/smpi/colls/allgatherv-ring.c
-  src/smpi/colls/allreduce-lr.c
-  src/smpi/colls/allreduce-ompi-ring-segmented.c
-  src/smpi/colls/allreduce-rab-rdb.c
-  src/smpi/colls/allreduce-rab1.c
-  src/smpi/colls/allreduce-rab2.c
-  src/smpi/colls/allreduce-rdb.c
-  src/smpi/colls/allreduce-redbcast.c
-  src/smpi/colls/allreduce-smp-binomial-pipeline.c
-  src/smpi/colls/allreduce-smp-binomial.c
-  src/smpi/colls/allreduce-smp-rdb.c
-  src/smpi/colls/allreduce-smp-rsag-lr.c
-  src/smpi/colls/allreduce-smp-rsag-rab.c
-  src/smpi/colls/allreduce-smp-rsag.c
-  src/smpi/colls/allreduce-mvapich-rs.c
-  src/smpi/colls/allreduce-mvapich-two-level.c
-  src/smpi/colls/alltoall-2dmesh.c
-  src/smpi/colls/alltoall-3dmesh.c
-#  src/smpi/colls/alltoall-bruck.c
-  src/smpi/colls/alltoall-pair-light-barrier.c
-  src/smpi/colls/alltoall-pair-mpi-barrier.c
-  src/smpi/colls/alltoall-pair-one-barrier.c
-  src/smpi/colls/alltoall-pair.c
-  src/smpi/colls/alltoall-rdb.c
-  src/smpi/colls/alltoall-ring-light-barrier.c
-  src/smpi/colls/alltoall-ring-mpi-barrier.c
-  src/smpi/colls/alltoall-ring-one-barrier.c
-  src/smpi/colls/alltoall-ring.c
-  src/smpi/colls/alltoall-mvapich-scatter-dest.c
-  src/smpi/colls/alltoallv-bruck.c
-  src/smpi/colls/alltoallv-ompi-basic-linear.c
-  src/smpi/colls/alltoallv-pair-light-barrier.c
-  src/smpi/colls/alltoallv-pair-mpi-barrier.c
-  src/smpi/colls/alltoallv-pair-one-barrier.c
-  src/smpi/colls/alltoallv-pair.c
-  src/smpi/colls/alltoallv-ring-light-barrier.c
-  src/smpi/colls/alltoallv-ring-mpi-barrier.c
-  src/smpi/colls/alltoallv-ring-one-barrier.c
-  src/smpi/colls/alltoallv-ring.c
-  src/smpi/colls/barrier-ompi.c
-  src/smpi/colls/barrier-mvapich2-pair.c
-  src/smpi/colls/bcast-NTSB.c
-  src/smpi/colls/bcast-NTSL-Isend.c
-  src/smpi/colls/bcast-NTSL.c
-  src/smpi/colls/bcast-SMP-binary.c
-  src/smpi/colls/bcast-SMP-binomial.c
-  src/smpi/colls/bcast-SMP-linear.c
-  src/smpi/colls/bcast-arrival-pattern-aware-wait.c
-  src/smpi/colls/bcast-arrival-pattern-aware.c
-  src/smpi/colls/bcast-arrival-scatter.c
-  src/smpi/colls/bcast-binomial-tree.c
-  src/smpi/colls/bcast-flattree-pipeline.c
-  src/smpi/colls/bcast-flattree.c
-  src/smpi/colls/bcast-ompi-pipeline.c
-  src/smpi/colls/bcast-ompi-split-bintree.c
-  src/smpi/colls/bcast-mvapich-smp.c
-  src/smpi/colls/bcast-scatter-LR-allgather.c
-  src/smpi/colls/bcast-scatter-rdb-allgather.c
-  src/smpi/colls/coll_tuned_topo.c
-  src/smpi/colls/colls_global.c
-  src/smpi/colls/gather-ompi.c
-  src/smpi/colls/gather-mvapich.c
-  src/smpi/colls/reduce-NTSL.c
-  src/smpi/colls/reduce-arrival-pattern-aware.c
-  src/smpi/colls/reduce-binomial.c
-  src/smpi/colls/reduce-flat-tree.c
-  src/smpi/colls/reduce-ompi.c
-  src/smpi/colls/reduce-scatter-gather.c
-  src/smpi/colls/reduce_scatter-mpich.c
-  src/smpi/colls/reduce_scatter-ompi.c
-  src/smpi/colls/reduce-mvapich-knomial.c
-  src/smpi/colls/reduce-mvapich-two-level.c
-  src/smpi/colls/reduce-rab.c
-  src/smpi/colls/scatter-ompi.c
-  src/smpi/colls/scatter-mvapich-two-level.c
+  src/smpi/colls/allgather-2dmesh.cpp
+  src/smpi/colls/allgather-3dmesh.cpp
+  src/smpi/colls/allgather-GB.cpp
+  src/smpi/colls/allgather-NTSLR-NB.cpp
+  src/smpi/colls/allgather-NTSLR.cpp
+  src/smpi/colls/allgather-SMP-NTS.cpp
+  src/smpi/colls/allgather-bruck.cpp
+  src/smpi/colls/allgather-loosely-lr.cpp
+  src/smpi/colls/allgather-ompi-neighborexchange.cpp
+  src/smpi/colls/allgather-pair.cpp
+  src/smpi/colls/allgather-mvapich-smp.cpp
+  src/smpi/colls/allgather-rdb.cpp
+  src/smpi/colls/allgather-rhv.cpp
+  src/smpi/colls/allgather-ring.cpp
+  src/smpi/colls/allgather-smp-simple.cpp
+  src/smpi/colls/allgather-spreading-simple.cpp
+  src/smpi/colls/allgatherv-GB.cpp
+  src/smpi/colls/allgatherv-mpich-rdb.cpp
+  src/smpi/colls/allgatherv-mpich-ring.cpp
+  src/smpi/colls/allgatherv-ompi-bruck.cpp
+  src/smpi/colls/allgatherv-ompi-neighborexchange.cpp
+  src/smpi/colls/allgatherv-pair.cpp
+  src/smpi/colls/allgatherv-ring.cpp
+  src/smpi/colls/allreduce-lr.cpp
+  src/smpi/colls/allreduce-ompi-ring-segmented.cpp
+  src/smpi/colls/allreduce-rab-rdb.cpp
+  src/smpi/colls/allreduce-rab1.cpp
+  src/smpi/colls/allreduce-rab2.cpp
+  src/smpi/colls/allreduce-rdb.cpp
+  src/smpi/colls/allreduce-redbcast.cpp
+  src/smpi/colls/allreduce-smp-binomial-pipeline.cpp
+  src/smpi/colls/allreduce-smp-binomial.cpp
+  src/smpi/colls/allreduce-smp-rdb.cpp
+  src/smpi/colls/allreduce-smp-rsag-lr.cpp
+  src/smpi/colls/allreduce-smp-rsag-rab.cpp
+  src/smpi/colls/allreduce-smp-rsag.cpp
+  src/smpi/colls/allreduce-mvapich-rs.cpp
+  src/smpi/colls/allreduce-mvapich-two-level.cpp
+  src/smpi/colls/alltoall-2dmesh.cpp
+  src/smpi/colls/alltoall-3dmesh.cpp
+#  src/smpi/colls/alltoall-bruck.cpp
+  src/smpi/colls/alltoall-pair-light-barrier.cpp
+  src/smpi/colls/alltoall-pair-mpi-barrier.cpp
+  src/smpi/colls/alltoall-pair-one-barrier.cpp
+  src/smpi/colls/alltoall-pair.cpp
+  src/smpi/colls/alltoall-rdb.cpp
+  src/smpi/colls/alltoall-ring-light-barrier.cpp
+  src/smpi/colls/alltoall-ring-mpi-barrier.cpp
+  src/smpi/colls/alltoall-ring-one-barrier.cpp
+  src/smpi/colls/alltoall-ring.cpp
+  src/smpi/colls/alltoall-mvapich-scatter-dest.cpp
+  src/smpi/colls/alltoallv-bruck.cpp
+  src/smpi/colls/alltoallv-ompi-basic-linear.cpp
+  src/smpi/colls/alltoallv-pair-light-barrier.cpp
+  src/smpi/colls/alltoallv-pair-mpi-barrier.cpp
+  src/smpi/colls/alltoallv-pair-one-barrier.cpp
+  src/smpi/colls/alltoallv-pair.cpp
+  src/smpi/colls/alltoallv-ring-light-barrier.cpp
+  src/smpi/colls/alltoallv-ring-mpi-barrier.cpp
+  src/smpi/colls/alltoallv-ring-one-barrier.cpp
+  src/smpi/colls/alltoallv-ring.cpp
+  src/smpi/colls/barrier-ompi.cpp
+  src/smpi/colls/barrier-mvapich2-pair.cpp
+  src/smpi/colls/bcast-NTSB.cpp
+  src/smpi/colls/bcast-NTSL-Isend.cpp
+  src/smpi/colls/bcast-NTSL.cpp
+  src/smpi/colls/bcast-SMP-binary.cpp
+  src/smpi/colls/bcast-SMP-binomial.cpp
+  src/smpi/colls/bcast-SMP-linear.cpp
+  src/smpi/colls/bcast-arrival-pattern-aware-wait.cpp
+  src/smpi/colls/bcast-arrival-pattern-aware.cpp
+  src/smpi/colls/bcast-arrival-scatter.cpp
+  src/smpi/colls/bcast-binomial-tree.cpp
+  src/smpi/colls/bcast-flattree-pipeline.cpp
+  src/smpi/colls/bcast-flattree.cpp
+  src/smpi/colls/bcast-ompi-pipeline.cpp
+  src/smpi/colls/bcast-ompi-split-bintree.cpp
+  src/smpi/colls/bcast-mvapich-smp.cpp
+  src/smpi/colls/bcast-scatter-LR-allgather.cpp
+  src/smpi/colls/bcast-scatter-rdb-allgather.cpp
+  src/smpi/colls/coll_tuned_topo.cpp
+  src/smpi/colls/colls_global.cpp
+  src/smpi/colls/gather-ompi.cpp
+  src/smpi/colls/gather-mvapich.cpp
+  src/smpi/colls/reduce-NTSL.cpp
+  src/smpi/colls/reduce-arrival-pattern-aware.cpp
+  src/smpi/colls/reduce-binomial.cpp
+  src/smpi/colls/reduce-flat-tree.cpp
+  src/smpi/colls/reduce-ompi.cpp
+  src/smpi/colls/reduce-scatter-gather.cpp
+  src/smpi/colls/reduce_scatter-mpich.cpp
+  src/smpi/colls/reduce_scatter-ompi.cpp
+  src/smpi/colls/reduce-mvapich-knomial.cpp
+  src/smpi/colls/reduce-mvapich-two-level.cpp
+  src/smpi/colls/reduce-rab.cpp
+  src/smpi/colls/scatter-ompi.cpp
+  src/smpi/colls/scatter-mvapich-two-level.cpp
   src/smpi/colls/smpi_automatic_selector.cpp
-  src/smpi/colls/smpi_mpich_selector.c
-  src/smpi/colls/smpi_intel_mpi_selector.c
-  src/smpi/colls/smpi_openmpi_selector.c
-  src/smpi/colls/smpi_mvapich2_selector.c
+  src/smpi/colls/smpi_mpich_selector.cpp
+  src/smpi/colls/smpi_intel_mpi_selector.cpp
+  src/smpi/colls/smpi_openmpi_selector.cpp
+  src/smpi/colls/smpi_mvapich2_selector.cpp
   src/smpi/instr_smpi.cpp
+  src/smpi/forward.hpp
   src/smpi/smpi_base.cpp
   src/smpi/smpi_bench.cpp
   src/smpi/smpi_memory.cpp
   src/smpi/smpi_static_variables.cpp
   src/smpi/smpi_coll.cpp
   src/smpi/smpi_comm.cpp
+  src/smpi/smpi_comm.hpp
   src/smpi/smpi_deployment.cpp
   src/smpi/smpi_dvfs.cpp
   src/smpi/smpi_global.cpp
   src/smpi/smpi_group.cpp
+  src/smpi/smpi_group.hpp
   src/smpi/smpi_mpi.cpp
   src/smpi/smpi_mpi_dt.cpp
   src/smpi/smpi_pmpi.cpp
   src/smpi/smpi_replay.cpp
   src/smpi/smpi_rma.cpp
   src/smpi/smpi_topo.cpp
+  src/smpi/smpi_utils.cpp
   src/smpi/smpi_f77.cpp
+  
+  src/surf/network_smpi.cpp
+  src/surf/network_ib.cpp
   )
 
 set(XBT_SRC
@@ -254,7 +246,6 @@ set(XBT_SRC
   src/xbt/dynar.cpp
   src/xbt/ex.cpp
   src/xbt/exception.cpp
-  src/xbt/fifo.c
   src/xbt/graph.c
   src/xbt/heap.c
   src/xbt/lib.c
@@ -269,7 +260,7 @@ set(XBT_SRC
   src/xbt/xbt_log_appender_file.c
   src/xbt/xbt_log_layout_format.c
   src/xbt/xbt_log_layout_simple.c
-  src/xbt/xbt_main.c
+  src/xbt/xbt_main.cpp
   src/xbt/xbt_matrix.c
   src/xbt/xbt_os_file.c
   src/xbt/xbt_os_synchro.c
@@ -289,18 +280,34 @@ set(NS3_SRC  src/surf/network_ns3.cpp
              src/surf/ns3/ns3_simulator.cc )
 
 set(SURF_SRC
-  src/surf/AsImpl.cpp
-  src/surf/AsCluster.cpp
-  src/surf/AsClusterFatTree.cpp
-  src/surf/AsClusterTorus.cpp
-  src/surf/AsClusterDragonfly.cpp
-  src/surf/AsDijkstra.cpp
-  src/surf/AsFloyd.cpp
-  src/surf/AsFull.cpp
-  src/surf/AsRoutedGraph.cpp
-  src/surf/AsNone.cpp
-  src/surf/AsVivaldi.cpp
+  src/kernel/routing/ClusterZone.cpp
+  src/kernel/routing/ClusterZone.hpp
+  src/kernel/routing/DijkstraZone.cpp
+  src/kernel/routing/DijkstraZone.hpp
+  src/kernel/routing/DragonflyZone.cpp
+  src/kernel/routing/DragonflyZone.hpp
+  src/kernel/routing/EmptyZone.cpp
+  src/kernel/routing/EmptyZone.hpp
+  src/kernel/routing/FatTreeZone.cpp
+  src/kernel/routing/FatTreeZone.hpp
+  src/kernel/routing/FloydZone.cpp
+  src/kernel/routing/FloydZone.hpp
+  src/kernel/routing/FullZone.cpp
+  src/kernel/routing/FullZone.hpp
+  src/kernel/routing/NetPoint.cpp
+  src/kernel/routing/NetPoint.hpp
+  src/kernel/routing/NetZoneImpl.cpp
+  src/kernel/routing/NetZoneImpl.hpp
+  src/kernel/routing/RoutedZone.cpp
+  src/kernel/routing/RoutedZone.hpp
+  src/kernel/routing/TorusZone.cpp
+  src/kernel/routing/TorusZone.hpp
+  src/kernel/routing/VivaldiZone.cpp
+  src/kernel/routing/VivaldiZone.hpp  
   
+  src/kernel/EngineImpl.cpp
+  src/kernel/EngineImpl.hpp
+
   src/surf/cpu_cas01.cpp
   src/surf/cpu_interface.cpp
   src/surf/cpu_ti.cpp
@@ -312,9 +319,7 @@ set(SURF_SRC
   src/surf/network_cm02.cpp
   src/surf/network_constant.cpp
   src/surf/network_interface.cpp
-  src/surf/network_smpi.cpp
-  src/surf/network_ib.cpp
-  src/surf/plugins/energy.cpp
+  src/surf/plugins/host_energy.cpp
   src/surf/PropertyHolder.cpp
   src/surf/sg_platf.cpp
   src/surf/storage_interface.cpp
@@ -328,36 +333,45 @@ set(SURF_SRC
   src/surf/xml/surfxml_parseplatf.cpp
   src/surf/trace_mgr.hpp
   src/surf/trace_mgr.cpp
-  src/surf/vm_hl13.cpp
-  src/surf/virtual_machine.cpp
   src/surf/host_clm03.cpp
   src/surf/HostImpl.cpp
   src/surf/ptask_L07.cpp
   )
 
+set(PLUGINS_SRC
+  src/plugins/vm/s4u_VirtualMachine.cpp
+  src/plugins/vm/VirtualMachineImpl.hpp
+  src/plugins/vm/VirtualMachineImpl.cpp
+  src/plugins/vm/VmHostExt.hpp
+  src/plugins/vm/VmHostExt.cpp
+  )
+  
 set(SIMIX_GENERATED_SRC   src/simix/popping_generated.cpp  )
 set(SIMIX_SRC
   src/kernel/future.cpp
   src/simix/libsmx.cpp
   src/simix/smx_context.cpp
-  src/simix/Context.cpp
-  src/simix/ContextRaw.cpp
+  src/kernel/context/Context.cpp
+  src/kernel/context/Context.hpp
+  src/kernel/context/ContextRaw.cpp
   src/simix/smx_deployment.cpp
   src/simix/smx_environment.cpp
   src/simix/smx_global.cpp
   src/simix/smx_host.cpp
   src/simix/smx_io.cpp
   src/simix/smx_network.cpp
-  src/simix/smx_process.cpp
+  src/simix/ActorImpl.cpp
+  src/simix/ActorImpl.hpp
   src/simix/smx_synchro.cpp
-  src/simix/smx_vm.cpp
   src/simix/popping.cpp
-  src/simix/Synchro.cpp
-  src/simix/SynchroComm.cpp
-  src/simix/SynchroExec.cpp
-  src/simix/SynchroSleep.cpp
-  src/simix/SynchroRaw.cpp
-  src/simix/SynchroIo.cpp
+  src/kernel/activity/ActivityImpl.cpp
+  src/kernel/activity/MailboxImpl.cpp
+  src/kernel/activity/MailboxImpl.hpp
+  src/kernel/activity/SynchroComm.cpp
+  src/kernel/activity/SynchroExec.cpp
+  src/kernel/activity/SynchroSleep.cpp
+  src/kernel/activity/SynchroRaw.cpp
+  src/kernel/activity/SynchroIo.cpp
   
   ${SIMIX_GENERATED_SRC}
   )
@@ -366,26 +380,27 @@ set(SIMIX_SRC
 if (HAVE_BOOST_CONTEXTS)
   set(SIMIX_SRC
       ${SIMIX_SRC}
-      src/simix/ContextBoost.hpp
-      src/simix/ContextBoost.cpp)
+      src/kernel/context/ContextBoost.hpp
+      src/kernel/context/ContextBoost.cpp)
 else()
   set(EXTRA_DIST
       ${EXTRA_DIST}
-      src/simix/ContextBoost.hpp
-      src/simix/ContextBoost.cpp)
+      src/kernel/context/ContextBoost.hpp
+      src/kernel/context/ContextBoost.cpp)
 endif()
 
 set(S4U_SRC
   src/s4u/s4u_actor.cpp
-  src/s4u/s4u_as.cpp
   src/s4u/s4u_activity.cpp
+  src/s4u/s4u_conditionVariable.cpp
   src/s4u/s4u_comm.cpp
   src/s4u/s4u_engine.cpp  
   src/s4u/s4u_file.cpp  
   src/s4u/s4u_host.cpp  
+  src/s4u/s4u_link.cpp
   src/s4u/s4u_mailbox.cpp
   src/s4u/s4u_mutex.cpp
-  src/s4u/s4u_conditionVariable.cpp
+  src/s4u/s4u_netzone.cpp
   src/s4u/s4u_storage.cpp
 )
 
@@ -398,7 +413,6 @@ set(SIMGRID_SRC
 set(MSG_SRC
   src/msg/instr_msg_process.cpp
   src/msg/instr_msg_task.cpp
-  src/msg/instr_msg_vm.cpp
   src/msg/msg_actions.cpp
   src/msg/msg_deployment.cpp
   src/msg/msg_environment.cpp
@@ -415,15 +429,10 @@ set(MSG_SRC
 
 set(SIMDAG_SRC
   src/simdag/sd_daxloader.cpp
+  src/simdag/sd_dotloader.cpp
   src/simdag/sd_global.cpp
   src/simdag/sd_task.cpp
-  src/simdag/sd_workstation.cpp
   )
-if(HAVE_GRAPHVIZ)
-  set(SIMDAG_SRC    ${SIMDAG_SRC} src/simdag/sd_dotloader.cpp)
-else()
-  set(EXTRA_DIST    ${EXTRA_DIST} src/simdag/sd_dotloader.cpp)
-endif()
 
 set(BINDINGS_SRC
   src/bindings/lua/lua_private.h
@@ -472,7 +481,6 @@ set(JMSG_JAVA_SRC
   src/bindings/java/org/simgrid/msg/Msg.java
   src/bindings/java/org/simgrid/msg/MsgException.java
   src/bindings/java/org/simgrid/msg/Mutex.java
-  src/bindings/java/org/simgrid/msg/NativeException.java
   src/bindings/java/org/simgrid/msg/Process.java
   src/bindings/java/org/simgrid/msg/ProcessKilledError.java
   src/bindings/java/org/simgrid/msg/ProcessNotFoundException.java
@@ -520,12 +528,12 @@ set(TRACING_SRC
   )
 
 set(JEDULE_SRC
-  include/simgrid/jedule/jedule_events.h
-  include/simgrid/jedule/jedule_output.h
-  include/simgrid/jedule/jedule_platform.h
+  include/simgrid/jedule/jedule_events.hpp
+  include/simgrid/jedule/jedule.hpp
+  include/simgrid/jedule/jedule_platform.hpp
   include/simgrid/jedule/jedule_sd_binding.h
   src/instr/jedule/jedule_events.cpp
-  src/instr/jedule/jedule_output.cpp
+  src/instr/jedule/jedule.cpp
   src/instr/jedule/jedule_platform.cpp
   src/instr/jedule/jedule_sd_binding.cpp
   )
@@ -541,17 +549,24 @@ set(MC_SRC_BASE
   )
 
 set(MC_SRC
-  src/mc/RemotePtr.hpp
+  src/mc/checker/Checker.cpp
+  src/mc/checker/Checker.hpp
+  src/mc/checker/CommunicationDeterminismChecker.cpp
+  src/mc/checker/CommunicationDeterminismChecker.hpp
+  src/mc/checker/SafetyChecker.cpp
+  src/mc/checker/SafetyChecker.hpp
+  src/mc/checker/LivenessChecker.cpp
+  src/mc/checker/LivenessChecker.hpp
+  src/mc/remote/Channel.cpp
+  src/mc/remote/Channel.hpp
+  src/mc/remote/Client.cpp
+  src/mc/remote/Client.hpp
+  src/mc/remote/RemotePtr.hpp
+  src/mc/remote/mc_protocol.h
+  src/mc/remote/mc_protocol.cpp
+  
   src/mc/AddressSpace.hpp
   src/mc/AddressSpace.cpp
-  src/mc/Channel.cpp
-  src/mc/Channel.hpp
-  src/mc/Checker.cpp
-  src/mc/Checker.hpp
-  src/mc/Client.cpp
-  src/mc/Client.hpp
-  src/mc/CommunicationDeterminismChecker.cpp
-  src/mc/CommunicationDeterminismChecker.hpp
   src/mc/Frame.hpp
   src/mc/Frame.cpp
   src/mc/ModelChecker.hpp
@@ -560,8 +575,6 @@ set(MC_SRC
   src/mc/ObjectInformation.cpp
   src/mc/PageStore.hpp
   src/mc/PageStore.cpp
-  src/mc/SafetyChecker.cpp
-  src/mc/SafetyChecker.hpp
   src/mc/ChunkedData.hpp
   src/mc/ChunkedData.cpp
   src/mc/RegionSnapshot.cpp
@@ -594,10 +607,8 @@ set(MC_SRC
   src/mc/mc_hash.cpp
   src/mc/mc_ignore.h
   src/mc/mc_mmalloc.h
-  src/mc/LivenessChecker.hpp
   src/mc/LocationList.hpp
   src/mc/LocationList.cpp
-  src/mc/LivenessChecker.cpp
   src/mc/mc_record.cpp
   src/mc/mc_member.cpp
   src/mc/mc_memory.cpp
@@ -610,8 +621,6 @@ set(MC_SRC
   src/mc/VisitedState.cpp
   src/mc/VisitedState.hpp
   src/mc/mc_client_api.cpp
-  src/mc/mc_protocol.h
-  src/mc/mc_protocol.cpp
   src/mc/mc_smx.h
   src/mc/mc_smx.cpp
   src/mc/mc_xbt.hpp
@@ -620,7 +629,7 @@ set(MC_SRC
   src/mc/Transition.hpp
   )
 
-set(MC_SIMGRID_MC_SRC  src/mc/simgrid_mc.cpp)
+set(MC_SIMGRID_MC_SRC  src/mc/checker/simgrid_mc.cpp)
 
 set(headers_to_install
   include/msg/msg.h
@@ -632,7 +641,6 @@ set(headers_to_install
   include/simgrid/instr.h
   include/simgrid/msg.h
   include/simgrid/simdag.h
-  include/simgrid.h
   include/simgrid/datatypes.h
   include/simgrid/modelchecker.h
   include/simgrid/forward.h
@@ -643,18 +651,20 @@ set(headers_to_install
   include/simgrid/host.h
   include/simgrid/link.h
   include/simgrid/s4u/forward.hpp
-  include/simgrid/s4u/actor.hpp
-  include/simgrid/s4u/As.hpp
   include/simgrid/s4u/Activity.hpp
+  include/simgrid/s4u/Actor.hpp
   include/simgrid/s4u/comm.hpp
+  include/simgrid/s4u/conditionVariable.hpp
   include/simgrid/s4u/engine.hpp  
   include/simgrid/s4u/file.hpp  
   include/simgrid/s4u/host.hpp  
-  include/simgrid/s4u/mailbox.hpp  
-  include/simgrid/s4u/mutex.hpp
-  include/simgrid/s4u/conditionVariable.hpp
+  include/simgrid/s4u/Link.hpp  
+  include/simgrid/s4u/Mailbox.hpp
+  include/simgrid/s4u/Mutex.hpp
+  include/simgrid/s4u/NetZone.hpp
   include/simgrid/s4u/storage.hpp  
-  include/simgrid/s4u.h
+  include/simgrid/s4u/VirtualMachine.hpp  
+  include/simgrid/s4u.hpp
   include/simgrid/plugins/energy.h
   include/smpi/mpi.h
   include/smpi/smpi.h
@@ -681,7 +691,6 @@ set(headers_to_install
   include/xbt/exception.hpp
   include/xbt/backtrace.h
   include/xbt/backtrace.hpp
-  include/xbt/fifo.h
   include/xbt/file.h
   include/xbt/function_types.h
   include/xbt/functional.hpp
@@ -704,7 +713,7 @@ set(headers_to_install
   include/xbt/str.h
   include/xbt/strbuff.h
   include/xbt/swag.h
-  include/xbt/synchro_core.h
+  include/xbt/synchro.h
   include/xbt/sysdep.h
   include/xbt/system_error.hpp
   include/xbt/utility.hpp
@@ -719,11 +728,11 @@ set(source_of_generated_headers
 ### depend of some variables setted upper
 # -->HAVE_THREAD_CONTEXTS HAVE_UCONTEXT_CONTEXTS
 if(${HAVE_THREAD_CONTEXTS}) #pthread
-  set(SURF_SRC   ${SURF_SRC}   src/simix/ContextThread.cpp
-                               src/simix/ContextThread.hpp )
+  set(SURF_SRC   ${SURF_SRC}   src/kernel/context/ContextThread.cpp
+                               src/kernel/context/ContextThread.hpp )
 else() # NOT pthread
-  set(EXTRA_DIST ${EXTRA_DIST} src/simix/ContextThread.cpp
-                               src/simix/ContextThread.hpp )
+  set(EXTRA_DIST ${EXTRA_DIST} src/kernel/context/ContextThread.cpp
+                               src/kernel/context/ContextThread.hpp )
 endif()
 
 if(${HAVE_THREAD_CONTEXTS}) #pthread
@@ -734,13 +743,14 @@ else() # NOT pthread
 endif()
 
 if(${HAVE_UCONTEXT_CONTEXTS}) #ucontext
-  set(SURF_SRC    ${SURF_SRC}   src/simix/ContextUnix.cpp)
+  set(SURF_SRC    ${SURF_SRC}   src/kernel/context/ContextUnix.cpp)
 else() # NOT ucontext
-  set(EXTRA_DIST  ${EXTRA_DIST} src/simix/ContextUnix.cpp)
+  set(EXTRA_DIST  ${EXTRA_DIST} src/kernel/context/ContextUnix.cpp)
 endif()
 
 ### Simgrid Lib sources
 set(simgrid_sources
+  ${PLUGINS_SRC}
   ${BINDINGS_SRC}
   ${MC_SRC_BASE}
   ${MSG_SRC}
@@ -775,8 +785,8 @@ endif()
 if(WIN32)
   set(simgrid_sources
     ${simgrid_sources}
-    src/simix/ContextThread.cpp
-    src/simix/ContextThread.hpp
+    src/kernel/context/ContextThread.cpp
+    src/kernel/context/ContextThread.hpp
     src/xbt/xbt_os_thread.c
     )
 endif()
@@ -807,14 +817,12 @@ set(DOC_SOURCES
   doc/doxygen/FAQ.doc
   doc/doxygen/application.doc
   doc/doxygen/community.doc
-  doc/doxygen/community_contact.doc
-  doc/doxygen/community_extend.doc
-  doc/doxygen/community_giveback.doc
   doc/doxygen/deployment.doc
   doc/doxygen/examples.doc
   doc/doxygen/footer.html
   doc/doxygen/getting_started.doc
   doc/doxygen/header.html
+  doc/doxygen/howtos.doc
   doc/doxygen/index.doc
   doc/doxygen/inside.doc
   doc/doxygen/inside_tests.doc
@@ -825,7 +833,8 @@ set(DOC_SOURCES
   doc/doxygen/install.doc
   doc/doxygen/install_yours.doc
   doc/doxygen/java.doc
-  doc/doxygen/tutorial.doc
+  doc/doxygen/tutorial_msg.doc
+  doc/doxygen/tutorial_smpi.doc
   doc/doxygen/models.doc
   doc/doxygen/module-msg.doc
   doc/doxygen/module-s4u.doc
@@ -847,18 +856,22 @@ set(DOC_SOURCES
   doc/doxygen/scenario.doc
   doc/doxygen/stylesheet.css
   doc/doxygen/uhood.doc
+  doc/doxygen/uhood_switch.doc
+  doc/doxygen/uhood_arch.doc
 
   doc/manpage/smpicc.1
   doc/manpage/smpicxx.1
   doc/manpage/smpif90.1
   doc/manpage/smpiff.1
   doc/manpage/smpirun.1
+  doc/manpage/tesh.pod
 
   doc/msg-tuto-src/deployment0.xml
   doc/msg-tuto-src/deployment1.xml
   doc/msg-tuto-src/deployment2.xml
   doc/msg-tuto-src/deployment3.xml
   doc/msg-tuto-src/deployment_general.xml
+  doc/msg-tuto-src/Makefile
   doc/msg-tuto-src/masterworker0.c
   doc/msg-tuto-src/masterworker1.c
   doc/msg-tuto-src/masterworker2.c
@@ -916,8 +929,6 @@ set(txt_files
   AUTHORS
   COPYING
   README
-  README.java
-  README.lua
   ChangeLog
   INSTALL
   LICENSE-LGPL-2.1
@@ -988,6 +999,7 @@ set(CMAKEFILES_TXT
 
 set(CMAKE_SOURCE_FILES
   CMakeLists.txt
+  FindSimGrid.cmake
   tools/cmake/Tests.cmake
   tools/cmake/CTestConfig.cmake
   tools/cmake/CTestCustom.cmake
@@ -999,25 +1011,16 @@ set(CMAKE_SOURCE_FILES
   tools/cmake/Java.cmake
   tools/cmake/MakeLib.cmake
   tools/cmake/MakeLibWin.cmake
-  tools/cmake/Modules/FindGFortran.cmake
   tools/cmake/Modules/FindGraphviz.cmake
   tools/cmake/Modules/FindLibdw.cmake
   tools/cmake/Modules/FindLibunwind.cmake
+  tools/cmake/Modules/FindLibevent.cmake
   tools/cmake/Modules/FindLuaSimgrid.cmake
   tools/cmake/Modules/FindNS3.cmake
   tools/cmake/Modules/FindPAPI.cmake
   tools/cmake/Modules/FindRngStream.cmake
-  tools/cmake/Modules/FindSimGrid.cmake
   tools/cmake/Modules/FindValgrind.cmake
   tools/cmake/Option.cmake
-  tools/cmake/scripts/IPC/Run.pm
-  tools/cmake/scripts/IPC/Run/Debug.pm
-  tools/cmake/scripts/IPC/Run/IO.pm
-  tools/cmake/scripts/IPC/Run/Timer.pm
-  tools/cmake/scripts/IPC/Run/Win32Helper.pm
-  tools/cmake/scripts/IPC/Run/Win32IO.pm
-  tools/cmake/scripts/IPC/Run/Win32Pump.pm
-  tools/cmake/scripts/Diff.pm
   tools/cmake/scripts/my_valgrind.pl
   tools/cmake/scripts/update_tesh.pl
   tools/cmake/UnitTesting.cmake
@@ -1077,6 +1080,7 @@ set(PLATFORMS_EXAMPLES
   examples/platforms/data_center.xml
   examples/platforms/dogbone.xml
   examples/platforms/energy_platform.xml
+  examples/platforms/energy_cluster.xml
   examples/platforms/faulty_host.xml
   examples/platforms/g5k.xml
   examples/platforms/griffon.xml