X-Git-Url: http://info.iut-bm.univ-fcomte.fr/pub/gitweb/simgrid.git/blobdiff_plain/303cb119b0fdc5f3a11f361062a2a8d422ade378..cc375ad134c19925e1e343bae932be21cf8a8caf:/src/smpi/smpi_base.c diff --git a/src/smpi/smpi_base.c b/src/smpi/smpi_base.c index 0d5cdd2d61..2c99064110 100644 --- a/src/smpi/smpi_base.c +++ b/src/smpi/smpi_base.c @@ -2,44 +2,61 @@ * All rights reserved. */ /* This program is free software; you can redistribute it and/or modify it - * under the terms of the license (GNU LGPL) which comes with this package. */ + * under the terms of the license (GNU LGPL) which comes with this package. */ #include "private.h" -#include "xbt/time.h" +#include "xbt/virtu.h" #include "mc/mc.h" +#include "xbt/replay.h" +#include +#include "simix/smx_private.h" +#include "surf/surf.h" +#include "simgrid/sg_config.h" -XBT_LOG_NEW_DEFAULT_SUBCATEGORY(smpi_base, smpi, - "Logging specific to SMPI (base)"); -XBT_LOG_EXTERNAL_CATEGORY(smpi_base); -XBT_LOG_EXTERNAL_CATEGORY(smpi_bench); -XBT_LOG_EXTERNAL_CATEGORY(smpi_kernel); -XBT_LOG_EXTERNAL_CATEGORY(smpi_mpi); -XBT_LOG_EXTERNAL_CATEGORY(smpi_mpi_dt); -XBT_LOG_EXTERNAL_CATEGORY(smpi_coll); -XBT_LOG_EXTERNAL_CATEGORY(smpi_receiver); -XBT_LOG_EXTERNAL_CATEGORY(smpi_sender); -XBT_LOG_EXTERNAL_CATEGORY(smpi_util); - -static int match_recv(void* a, void* b) { + +XBT_LOG_NEW_DEFAULT_SUBCATEGORY(smpi_base, smpi, "Logging specific to SMPI (base)"); + + +static int match_recv(void* a, void* b, smx_action_t ignored) { MPI_Request ref = (MPI_Request)a; MPI_Request req = (MPI_Request)b; - - xbt_assert(ref, "Cannot match recv against null reference"); - xbt_assert(req, "Cannot match recv against null request"); - return req->size == ref->size - && (ref->src == MPI_ANY_SOURCE || req->src == ref->src) - && (ref->tag == MPI_ANY_TAG || req->tag == ref->tag); + XBT_DEBUG("Trying to match a recv of src %d against %d, tag %d against %d",ref->src,req->src, ref->tag, req->tag); + + xbt_assert(ref, "Cannot match recv against null reference"); + xbt_assert(req, "Cannot match recv against null request"); + if((ref->src == MPI_ANY_SOURCE || req->src == ref->src) + && (ref->tag == MPI_ANY_TAG || req->tag == ref->tag)){ + //we match, we can transfer some values + // FIXME : move this to the copy function ? + if(ref->src == MPI_ANY_SOURCE)ref->real_src = req->src; + if(ref->tag == MPI_ANY_TAG)ref->real_tag = req->tag; + if(ref->real_size < req->real_size) ref->truncated = 1; + if(req->detached==1){ + ref->detached_sender=req; //tie the sender to the receiver, as it is detached and has to be freed in the receiver + } + return 1; + }else return 0; } -static int match_send(void* a, void* b) { +static int match_send(void* a, void* b,smx_action_t ignored) { MPI_Request ref = (MPI_Request)a; MPI_Request req = (MPI_Request)b; - + XBT_DEBUG("Trying to match a send of src %d against %d, tag %d against %d",ref->src,req->src, ref->tag, req->tag); xbt_assert(ref, "Cannot match send against null reference"); xbt_assert(req, "Cannot match send against null request"); - return req->size == ref->size - && (req->src == MPI_ANY_SOURCE || req->src == ref->src) - && (req->tag == MPI_ANY_TAG || req->tag == ref->tag); + + if((req->src == MPI_ANY_SOURCE || req->src == ref->src) + && (req->tag == MPI_ANY_TAG || req->tag == ref->tag)) + { + if(req->src == MPI_ANY_SOURCE)req->real_src = ref->src; + if(req->tag == MPI_ANY_TAG)req->real_tag = ref->tag; + if(req->real_size < ref->real_size) req->truncated = 1; + if(ref->detached==1){ + req->detached_sender=ref; //tie the sender to the receiver, as it is detached and has to be freed in the receiver + } + + return 1; + } else return 0; } static MPI_Request build_request(void *buf, int count, @@ -48,8 +65,27 @@ static MPI_Request build_request(void *buf, int count, { MPI_Request request; + void *old_buf = NULL; + request = xbt_new(s_smpi_mpi_request_t, 1); + + s_smpi_subtype_t *subtype = datatype->substruct; + + if(datatype->has_subtype == 1){ + // This part handles the problem of non-contiguous memory + old_buf = buf; + buf = xbt_malloc(count*smpi_datatype_size(datatype)); + if (flags & SEND) { + subtype->serialize(old_buf, buf, count, datatype->substruct); + } + } + request->buf = buf; + // This part handles the problem of non-contiguous memory (for the + // unserialisation at the reception) + request->old_buf = old_buf; + request->old_type = datatype; + request->size = smpi_datatype_size(datatype) * count; request->src = src; request->dst = dst; @@ -57,21 +93,75 @@ static MPI_Request build_request(void *buf, int count, request->comm = comm; request->action = NULL; request->flags = flags; + request->detached = 0; + request->detached_sender = NULL; + + request->truncated = 0; + request->real_size = 0; + request->real_tag = 0; + + request->refcount=1; #ifdef HAVE_TRACING request->send = 0; request->recv = 0; #endif + if (flags & SEND) smpi_datatype_unuse(datatype); + return request; } + +void smpi_empty_status(MPI_Status * status) { + if(status != MPI_STATUS_IGNORE) { + status->MPI_SOURCE=MPI_ANY_SOURCE; + status->MPI_TAG=MPI_ANY_TAG; + status->count=0; + } +} + +void smpi_action_trace_run(char *path) +{ + char *name; + xbt_dynar_t todo; + xbt_dict_cursor_t cursor; + + action_fp=NULL; + if (path) { + action_fp = fopen(path, "r"); + xbt_assert(action_fp != NULL, "Cannot open %s: %s", path, + strerror(errno)); + } + + if (!xbt_dict_is_empty(action_queues)) { + XBT_WARN + ("Not all actions got consumed. If the simulation ended successfully (without deadlock), you may want to add new processes to your deployment file."); + + + xbt_dict_foreach(action_queues, cursor, name, todo) { + XBT_WARN("Still %lu actions for %s", xbt_dynar_length(todo), name); + } + } + + if (path) + fclose(action_fp); + xbt_dict_free(&action_queues); + action_queues = xbt_dict_new_homogeneous(NULL); +} + +static void smpi_mpi_request_free_voidp(void* request) +{ + MPI_Request req = request; + smpi_mpi_request_free(&req); +} + /* MPI Low level calls */ MPI_Request smpi_mpi_send_init(void *buf, int count, MPI_Datatype datatype, int dst, int tag, MPI_Comm comm) { MPI_Request request = - build_request(buf, count, datatype, smpi_comm_rank(comm), dst, tag, - comm, PERSISTENT | SEND); - + build_request(buf, count, datatype, smpi_comm_rank(comm), dst, tag, + comm, PERSISTENT | SEND); + request->refcount++; return request; } @@ -79,9 +169,9 @@ MPI_Request smpi_mpi_recv_init(void *buf, int count, MPI_Datatype datatype, int src, int tag, MPI_Comm comm) { MPI_Request request = - build_request(buf, count, datatype, src, smpi_comm_rank(comm), tag, - comm, PERSISTENT | RECV); - + build_request(buf, count, datatype, src, smpi_comm_rank(comm), tag, + comm, PERSISTENT | RECV); + request->refcount++; return request; } @@ -90,20 +180,65 @@ void smpi_mpi_start(MPI_Request request) smx_rdv_t mailbox; xbt_assert(!request->action, - "Cannot (re)start a non-finished communication"); + "Cannot (re)start a non-finished communication"); if(request->flags & RECV) { print_request("New recv", request); - mailbox = smpi_process_mailbox(); - request->action = SIMIX_req_comm_irecv(mailbox, request->buf, &request->size, &match_recv, request); + if (request->size < sg_cfg_get_int("smpi/async_small_thres")) + mailbox = smpi_process_mailbox_small(); + else + mailbox = smpi_process_mailbox(); + // we make a copy here, as the size is modified by simix, and we may reuse the request in another receive later + request->real_size=request->size; + smpi_datatype_use(request->old_type); + request->action = simcall_comm_irecv(mailbox, request->buf, &request->real_size, &match_recv, request); } else { + + int receiver = smpi_group_index(smpi_comm_group(request->comm), request->dst); +/* if(receiver == MPI_UNDEFINED) {*/ +/* XBT_WARN("Trying to send a message to a wrong rank");*/ +/* return;*/ +/* }*/ print_request("New send", request); - mailbox = smpi_process_remote_mailbox(request->dst); - request->action = SIMIX_req_comm_isend(mailbox, request->size, -1.0, - request->buf, request->size, &match_send, request, 0); + if (request->size < sg_cfg_get_int("smpi/async_small_thres")) { // eager mode + mailbox = smpi_process_remote_mailbox_small(receiver); + }else{ + XBT_DEBUG("Send request %p is not in the permanent receive mailbox (buf: %p)",request,request->buf); + mailbox = smpi_process_remote_mailbox(receiver); + } + if (request->size < 64*1024 ) { //(FIXME: this limit should be configurable) + void *oldbuf = NULL; + request->detached = 1; + request->refcount++; + if(request->old_type->has_subtype == 0){ + oldbuf = request->buf; + if (oldbuf){ + request->buf = xbt_malloc(request->size); + memcpy(request->buf,oldbuf,request->size); + } + } + XBT_DEBUG("Send request %p is detached; buf %p copied into %p",request,oldbuf,request->buf); + } + // we make a copy here, as the size is modified by simix, and we may reuse the request in another receive later + request->real_size=request->size; + smpi_datatype_use(request->old_type); + + request->action = + simcall_comm_isend(mailbox, request->size, -1.0, + request->buf, request->real_size, + &match_send, + &smpi_mpi_request_free_voidp, // how to free the userdata if a detached send fails + request, + // detach if msg size < eager/rdv switch limit + request->detached); + #ifdef HAVE_TRACING - SIMIX_req_set_category (request->action, TRACE_internal_smpi_get_category()); + /* FIXME: detached sends are not traceable (request->action == NULL) */ + if (request->action) + simcall_set_category(request->action, TRACE_internal_smpi_get_category()); #endif + } + } void smpi_mpi_startall(int count, MPI_Request * requests) @@ -117,16 +252,26 @@ void smpi_mpi_startall(int count, MPI_Request * requests) void smpi_mpi_request_free(MPI_Request * request) { - xbt_free(*request); - *request = MPI_REQUEST_NULL; + + if((*request) != MPI_REQUEST_NULL){ + (*request)->refcount--; + if((*request)->refcount<0) xbt_die("wrong refcount"); + + if((*request)->refcount==0){ + xbt_free(*request); + *request = MPI_REQUEST_NULL; + } + }else{ + xbt_die("freeing an already free request"); + } } MPI_Request smpi_isend_init(void *buf, int count, MPI_Datatype datatype, int dst, int tag, MPI_Comm comm) { MPI_Request request = - build_request(buf, count, datatype, smpi_comm_rank(comm), dst, tag, - comm, NON_PERSISTENT | SEND); + build_request(buf, count, datatype, smpi_comm_rank(comm), dst, tag, + comm, NON_PERSISTENT | SEND); return request; } @@ -135,7 +280,8 @@ MPI_Request smpi_mpi_isend(void *buf, int count, MPI_Datatype datatype, int dst, int tag, MPI_Comm comm) { MPI_Request request = - smpi_isend_init(buf, count, datatype, dst, tag, comm); + build_request(buf, count, datatype, smpi_comm_rank(comm), dst, tag, + comm, NON_PERSISTENT | SEND); smpi_mpi_start(request); return request; @@ -145,9 +291,8 @@ MPI_Request smpi_irecv_init(void *buf, int count, MPI_Datatype datatype, int src, int tag, MPI_Comm comm) { MPI_Request request = - build_request(buf, count, datatype, src, smpi_comm_rank(comm), tag, - comm, NON_PERSISTENT | RECV); - + build_request(buf, count, datatype, src, smpi_comm_rank(comm), tag, + comm, NON_PERSISTENT | RECV); return request; } @@ -155,7 +300,8 @@ MPI_Request smpi_mpi_irecv(void *buf, int count, MPI_Datatype datatype, int src, int tag, MPI_Comm comm) { MPI_Request request = - smpi_irecv_init(buf, count, datatype, src, tag, comm); + build_request(buf, count, datatype, src, smpi_comm_rank(comm), tag, + comm, NON_PERSISTENT | RECV); smpi_mpi_start(request); return request; @@ -165,18 +311,19 @@ void smpi_mpi_recv(void *buf, int count, MPI_Datatype datatype, int src, int tag, MPI_Comm comm, MPI_Status * status) { MPI_Request request; - request = smpi_mpi_irecv(buf, count, datatype, src, tag, comm); smpi_mpi_wait(&request, status); } + + void smpi_mpi_send(void *buf, int count, MPI_Datatype datatype, int dst, int tag, MPI_Comm comm) { MPI_Request request; - request = smpi_mpi_isend(buf, count, datatype, dst, tag, comm); smpi_mpi_wait(&request, MPI_STATUS_IGNORE); + } void smpi_mpi_sendrecv(void *sendbuf, int sendcount, MPI_Datatype sendtype, @@ -188,9 +335,9 @@ void smpi_mpi_sendrecv(void *sendbuf, int sendcount, MPI_Datatype sendtype, MPI_Status stats[2]; requests[0] = - smpi_isend_init(sendbuf, sendcount, sendtype, dst, sendtag, comm); + smpi_isend_init(sendbuf, sendcount, sendtype, dst, sendtag, comm); requests[1] = - smpi_irecv_init(recvbuf, recvcount, recvtype, src, recvtag, comm); + smpi_irecv_init(recvbuf, recvcount, recvtype, src, recvtag, comm); smpi_mpi_startall(2, requests); smpi_mpi_waitall(2, requests, stats); if(status != MPI_STATUS_IGNORE) { @@ -207,14 +354,38 @@ int smpi_mpi_get_count(MPI_Status * status, MPI_Datatype datatype) static void finish_wait(MPI_Request * request, MPI_Status * status) { MPI_Request req = *request; + if(!(req->detached && req->flags & SEND)){ + if(status != MPI_STATUS_IGNORE) { + status->MPI_SOURCE = req->src == MPI_ANY_SOURCE ? req->real_src : req->src; + status->MPI_TAG = req->tag == MPI_ANY_TAG ? req->real_tag : req->tag; + if(req->truncated) + status->MPI_ERROR = MPI_ERR_TRUNCATE; + else status->MPI_ERROR = MPI_SUCCESS ; + // this handles the case were size in receive differs from size in send + // FIXME: really this should just contain the count of receive-type blocks, + // right? + status->count = req->real_size; + } - if(status != MPI_STATUS_IGNORE) { - status->MPI_SOURCE = req->src; - status->MPI_TAG = req->tag; - status->MPI_ERROR = MPI_SUCCESS; - status->count = req->size; + print_request("Finishing", req); + MPI_Datatype datatype = req->old_type; + + if(datatype->has_subtype == 1){ + // This part handles the problem of non-contignous memory + // the unserialization at the reception + s_smpi_subtype_t *subtype = datatype->substruct; + if(req->flags & RECV) { + subtype->unserialize(req->buf, req->old_buf, req->real_size/smpi_datatype_size(datatype) , datatype->substruct); + } + if(req->detached == 0) free(req->buf); + } + smpi_datatype_unuse(datatype); + } + + if(req->detached_sender!=NULL){ + smpi_mpi_request_free(&(req->detached_sender)); } - print_request("Finishing", req); + if(req->flags & NON_PERSISTENT) { smpi_mpi_request_free(request); } else { @@ -222,14 +393,21 @@ static void finish_wait(MPI_Request * request, MPI_Status * status) } } -int smpi_mpi_test(MPI_Request * request, MPI_Status * status) -{ - int flag = SIMIX_req_comm_test((*request)->action); - - if(flag) { - smpi_mpi_wait(request, status); - } - return flag; +int smpi_mpi_test(MPI_Request * request, MPI_Status * status) { + int flag; + + //assume that request is not MPI_REQUEST_NULL (filtered in PMPI_Test or smpi_mpi_testall before) + if ((*request)->action == NULL) + flag = 1; + else + flag = simcall_comm_test((*request)->action); + if(flag) { + (*request)->refcount++; + finish_wait(request, status); + }else{ + smpi_empty_status(status); + } + return flag; } int smpi_mpi_testany(int count, MPI_Request requests[], int *index, @@ -246,31 +424,113 @@ int smpi_mpi_testany(int count, MPI_Request requests[], int *index, map = xbt_new(int, count); size = 0; for(i = 0; i < count; i++) { - if(requests[i]->action) { + if((requests[i]!=MPI_REQUEST_NULL) && requests[i]->action) { xbt_dynar_push(comms, &requests[i]->action); map[size] = i; size++; } } if(size > 0) { - *index = SIMIX_req_comm_testany(comms); - *index = map[*index]; - if(*index != MPI_UNDEFINED) { - smpi_mpi_wait(&requests[*index], status); + i = simcall_comm_testany(comms); + // not MPI_UNDEFINED, as this is a simix return code + if(i != -1) { + *index = map[i]; + finish_wait(&requests[*index], status); flag = 1; } + }else{ + //all requests are null or inactive, return true + flag=1; + smpi_empty_status(status); } xbt_free(map); xbt_dynar_free(&comms); } + return flag; } + +int smpi_mpi_testall(int count, MPI_Request requests[], + MPI_Status status[]) +{ + MPI_Status stat; + MPI_Status *pstat = status == MPI_STATUSES_IGNORE ? MPI_STATUS_IGNORE : &stat; + int flag=1; + int i; + for(i=0; i0){ + mailbox = smpi_process_mailbox_small(); + XBT_DEBUG("trying to probe the perm recv mailbox"); + request->action = simcall_comm_iprobe(mailbox, request->src, request->tag, &match_recv, (void*)request); + } + if (request->action==NULL){ + mailbox = smpi_process_mailbox(); + XBT_DEBUG("trying to probe the other mailbox"); + request->action = simcall_comm_iprobe(mailbox, request->src, request->tag, &match_recv, (void*)request); + } + + if(request->action){ + MPI_Request req = (MPI_Request)SIMIX_comm_get_src_data(request->action); + *flag = 1; + if(status != MPI_STATUS_IGNORE) { + status->MPI_SOURCE = req->src; + status->MPI_TAG = req->tag; + status->MPI_ERROR = MPI_SUCCESS; + status->count = req->real_size; + } + } + else *flag = 0; + smpi_mpi_request_free(&request); + + return; +} + void smpi_mpi_wait(MPI_Request * request, MPI_Status * status) { print_request("Waiting", *request); - SIMIX_req_comm_wait((*request)->action, -1.0); + if ((*request)->action != NULL) { // this is not a detached send + simcall_comm_wait((*request)->action, -1.0); + } finish_wait(request, status); + + // FIXME for a detached send, finish_wait is not called: } int smpi_mpi_waitany(int count, MPI_Request requests[], @@ -286,64 +546,132 @@ int smpi_mpi_waitany(int count, MPI_Request requests[], comms = xbt_dynar_new(sizeof(smx_action_t), NULL); map = xbt_new(int, count); size = 0; - XBT_DEBUG("Wait for one of"); + XBT_DEBUG("Wait for one of %d", count); for(i = 0; i < count; i++) { if(requests[i] != MPI_REQUEST_NULL) { - print_request(" ", requests[i]); - xbt_dynar_push(comms, &requests[i]->action); - map[size] = i; - size++; + if (requests[i]->action != NULL) { + XBT_DEBUG("Waiting any %p ", requests[i]); + xbt_dynar_push(comms, &requests[i]->action); + map[size] = i; + size++; + }else{ + //This is a finished detached request, let's return this one + size=0;//so we free the dynar but don't do the waitany call + index=i; + finish_wait(&requests[i], status);//cleanup if refcount = 0 + requests[i]=MPI_REQUEST_NULL;//set to null + break; + } } } if(size > 0) { - index = SIMIX_req_comm_waitany(comms); - index = map[index]; - finish_wait(&requests[index], status); + i = simcall_comm_waitany(comms); + + // not MPI_UNDEFINED, as this is a simix return code + if (i != -1) { + index = map[i]; + finish_wait(&requests[index], status); + } } xbt_free(map); xbt_dynar_free(&comms); } + + if (index==MPI_UNDEFINED) + smpi_empty_status(status); + return index; } -void smpi_mpi_waitall(int count, MPI_Request requests[], +int smpi_mpi_waitall(int count, MPI_Request requests[], MPI_Status status[]) { - int index, c; + int index, c; MPI_Status stat; - MPI_Status *pstat = status == MPI_STATUS_IGNORE ? MPI_STATUS_IGNORE : &stat; - + MPI_Status *pstat = status == MPI_STATUSES_IGNORE ? MPI_STATUS_IGNORE : &stat; + int retvalue=MPI_SUCCESS; + //tag invalid requests in the set for(c = 0; c < count; c++) { - if(MC_IS_ENABLED) { - smpi_mpi_wait(&requests[c], pstat); - index = c; - } else { - index = smpi_mpi_waitany(count, requests, pstat); - if(index == MPI_UNDEFINED) { - break; + if(requests[c]==MPI_REQUEST_NULL || requests[c]->dst == MPI_PROC_NULL ){ + if(status != MPI_STATUSES_IGNORE) + smpi_empty_status(&status[c]); + }else if(requests[c]->src == MPI_PROC_NULL ){ + if(status != MPI_STATUSES_IGNORE) { + smpi_empty_status(&status[c]); + status[c].MPI_SOURCE=MPI_PROC_NULL; } } - if(status != MPI_STATUS_IGNORE) { - memcpy(&status[index], pstat, sizeof(*pstat)); + } + for(c = 0; c < count; c++) { + if(MC_is_active()) { + smpi_mpi_wait(&requests[c], pstat); + index = c; + } else { + index = smpi_mpi_waitany(count, requests, pstat); + if(index == MPI_UNDEFINED) { + break; + } + if(status != MPI_STATUSES_IGNORE) { + memcpy(&status[index], pstat, sizeof(*pstat)); + if(status[index].MPI_ERROR==MPI_ERR_TRUNCATE)retvalue=MPI_ERR_IN_STATUS; + + } } } + + return retvalue; } int smpi_mpi_waitsome(int incount, MPI_Request requests[], int *indices, MPI_Status status[]) { int i, count, index; + MPI_Status stat; + MPI_Status *pstat = status == MPI_STATUSES_IGNORE ? MPI_STATUS_IGNORE : &stat; count = 0; - for(i = 0; i < incount; i++) { - if(smpi_mpi_testany(incount, requests, &index, status)) { - indices[count] = index; - count++; - } + for(i = 0; i < incount; i++) + { + index=smpi_mpi_waitany(incount, requests, pstat); + if(index!=MPI_UNDEFINED){ + indices[count] = index; + count++; + if(status != MPI_STATUSES_IGNORE) { + memcpy(&status[index], pstat, sizeof(*pstat)); + } + }else{ + return MPI_UNDEFINED; + } } return count; } +int smpi_mpi_testsome(int incount, MPI_Request requests[], int *indices, + MPI_Status status[]) +{ + int i, count, count_dead; + MPI_Status stat; + MPI_Status *pstat = status == MPI_STATUSES_IGNORE ? MPI_STATUS_IGNORE : &stat; + + count = 0; + count_dead = 0; + for(i = 0; i < incount; i++) { + if((requests[i] != MPI_REQUEST_NULL)) { + if(smpi_mpi_test(&requests[i], pstat)) { + indices[count] = i; + count++; + if(status != MPI_STATUSES_IGNORE) { + memcpy(&status[i], pstat, sizeof(*pstat)); + } + } + }else{ + count_dead++; + } + } + if(count_dead==incount)return MPI_UNDEFINED; + else return count; +} + void smpi_mpi_bcast(void *buf, int count, MPI_Datatype datatype, int root, MPI_Comm comm) { @@ -362,7 +690,8 @@ void smpi_mpi_gather(void *sendbuf, int sendcount, MPI_Datatype sendtype, int root, MPI_Comm comm) { int system_tag = 666; - int rank, size, src, index, sendsize, recvsize; + int rank, size, src, index; + MPI_Aint lb = 0, recvext = 0; MPI_Request *requests; rank = smpi_comm_rank(comm); @@ -371,20 +700,19 @@ void smpi_mpi_gather(void *sendbuf, int sendcount, MPI_Datatype sendtype, // Send buffer to root smpi_mpi_send(sendbuf, sendcount, sendtype, root, system_tag, comm); } else { - sendsize = smpi_datatype_size(sendtype); - recvsize = smpi_datatype_size(recvtype); + // FIXME: check for errors + smpi_datatype_extent(recvtype, &lb, &recvext); // Local copy from root - memcpy(&((char *) recvbuf)[root * recvcount * recvsize], sendbuf, - sendcount * sendsize * sizeof(char)); + smpi_datatype_copy(sendbuf, sendcount, sendtype, + (char *)recvbuf + root * recvcount * recvext, recvcount, recvtype); // Receive buffers from senders requests = xbt_new(MPI_Request, size - 1); index = 0; for(src = 0; src < size; src++) { if(src != root) { - requests[index] = smpi_irecv_init(&((char *) recvbuf) - [src * recvcount * recvsize], - recvcount, recvtype, src, - system_tag, comm); + requests[index] = smpi_irecv_init((char *)recvbuf + src * recvcount * recvext, + recvcount, recvtype, + src, system_tag, comm); index++; } } @@ -400,7 +728,8 @@ void smpi_mpi_gatherv(void *sendbuf, int sendcount, MPI_Datatype sendtype, MPI_Datatype recvtype, int root, MPI_Comm comm) { int system_tag = 666; - int rank, size, src, index, sendsize; + int rank, size, src, index; + MPI_Aint lb = 0, recvext = 0; MPI_Request *requests; rank = smpi_comm_rank(comm); @@ -409,19 +738,20 @@ void smpi_mpi_gatherv(void *sendbuf, int sendcount, MPI_Datatype sendtype, // Send buffer to root smpi_mpi_send(sendbuf, sendcount, sendtype, root, system_tag, comm); } else { - sendsize = smpi_datatype_size(sendtype); + // FIXME: check for errors + smpi_datatype_extent(recvtype, &lb, &recvext); // Local copy from root - memcpy(&((char *) recvbuf)[displs[root]], sendbuf, - sendcount * sendsize * sizeof(char)); + smpi_datatype_copy(sendbuf, sendcount, sendtype, + (char *)recvbuf + displs[root] * recvext, + recvcounts[root], recvtype); // Receive buffers from senders requests = xbt_new(MPI_Request, size - 1); index = 0; for(src = 0; src < size; src++) { if(src != root) { requests[index] = - smpi_irecv_init(&((char *) recvbuf)[displs[src]], - recvcounts[src], recvtype, src, system_tag, - comm); + smpi_irecv_init((char *)recvbuf + displs[src] * recvext, + recvcounts[src], recvtype, src, system_tag, comm); index++; } } @@ -438,27 +768,28 @@ void smpi_mpi_allgather(void *sendbuf, int sendcount, MPI_Comm comm) { int system_tag = 666; - int rank, size, other, index, sendsize, recvsize; + int rank, size, other, index; + MPI_Aint lb = 0, recvext = 0; MPI_Request *requests; rank = smpi_comm_rank(comm); size = smpi_comm_size(comm); - sendsize = smpi_datatype_size(sendtype); - recvsize = smpi_datatype_size(recvtype); + // FIXME: check for errors + smpi_datatype_extent(recvtype, &lb, &recvext); // Local copy from self - memcpy(&((char *) recvbuf)[rank * recvcount * recvsize], sendbuf, - sendcount * sendsize * sizeof(char)); + smpi_datatype_copy(sendbuf, sendcount, sendtype, + (char *)recvbuf + rank * recvcount * recvext, recvcount, + recvtype); // Send/Recv buffers to/from others; requests = xbt_new(MPI_Request, 2 * (size - 1)); index = 0; for(other = 0; other < size; other++) { if(other != rank) { requests[index] = - smpi_isend_init(sendbuf, sendcount, sendtype, other, system_tag, - comm); + smpi_isend_init(sendbuf, sendcount, sendtype, other, system_tag, + comm); index++; - requests[index] = smpi_irecv_init(&((char *) recvbuf) - [other * recvcount * recvsize], + requests[index] = smpi_irecv_init((char *)recvbuf + other * recvcount * recvext, recvcount, recvtype, other, system_tag, comm); index++; @@ -476,29 +807,30 @@ void smpi_mpi_allgatherv(void *sendbuf, int sendcount, MPI_Datatype recvtype, MPI_Comm comm) { int system_tag = 666; - int rank, size, other, index, sendsize, recvsize; + int rank, size, other, index; + MPI_Aint lb = 0, recvext = 0; MPI_Request *requests; rank = smpi_comm_rank(comm); size = smpi_comm_size(comm); - sendsize = smpi_datatype_size(sendtype); - recvsize = smpi_datatype_size(recvtype); + // FIXME: check for errors + smpi_datatype_extent(recvtype, &lb, &recvext); // Local copy from self - memcpy(&((char *) recvbuf)[displs[rank]], sendbuf, - sendcount * sendsize * sizeof(char)); + smpi_datatype_copy(sendbuf, sendcount, sendtype, + (char *)recvbuf + displs[rank] * recvext, + recvcounts[rank], recvtype); // Send buffers to others; requests = xbt_new(MPI_Request, 2 * (size - 1)); index = 0; for(other = 0; other < size; other++) { if(other != rank) { requests[index] = - smpi_isend_init(sendbuf, sendcount, sendtype, other, system_tag, - comm); + smpi_isend_init(sendbuf, sendcount, sendtype, other, system_tag, + comm); index++; requests[index] = - smpi_irecv_init(&((char *) recvbuf)[displs[other]], - recvcounts[other], recvtype, other, system_tag, - comm); + smpi_irecv_init((char *)recvbuf + displs[other] * recvext, recvcounts[other], + recvtype, other, system_tag, comm); index++; } } @@ -513,7 +845,8 @@ void smpi_mpi_scatter(void *sendbuf, int sendcount, MPI_Datatype sendtype, int root, MPI_Comm comm) { int system_tag = 666; - int rank, size, dst, index, sendsize, recvsize; + int rank, size, dst, index; + MPI_Aint lb = 0, sendext = 0; MPI_Request *requests; rank = smpi_comm_rank(comm); @@ -523,18 +856,17 @@ void smpi_mpi_scatter(void *sendbuf, int sendcount, MPI_Datatype sendtype, smpi_mpi_recv(recvbuf, recvcount, recvtype, root, system_tag, comm, MPI_STATUS_IGNORE); } else { - sendsize = smpi_datatype_size(sendtype); - recvsize = smpi_datatype_size(recvtype); + // FIXME: check for errors + smpi_datatype_extent(sendtype, &lb, &sendext); // Local copy from root - memcpy(recvbuf, &((char *) sendbuf)[root * sendcount * sendsize], - recvcount * recvsize * sizeof(char)); + smpi_datatype_copy((char *)sendbuf + root * sendcount * sendext, + sendcount, sendtype, recvbuf, recvcount, recvtype); // Send buffers to receivers requests = xbt_new(MPI_Request, size - 1); index = 0; for(dst = 0; dst < size; dst++) { if(dst != root) { - requests[index] = smpi_isend_init(&((char *) sendbuf) - [dst * sendcount * sendsize], + requests[index] = smpi_isend_init((char *)sendbuf + dst * sendcount * sendext, sendcount, sendtype, dst, system_tag, comm); index++; @@ -552,7 +884,8 @@ void smpi_mpi_scatterv(void *sendbuf, int *sendcounts, int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) { int system_tag = 666; - int rank, size, dst, index, sendsize, recvsize; + int rank, size, dst, index; + MPI_Aint lb = 0, sendext = 0; MPI_Request *requests; rank = smpi_comm_rank(comm); @@ -562,20 +895,19 @@ void smpi_mpi_scatterv(void *sendbuf, int *sendcounts, int *displs, smpi_mpi_recv(recvbuf, recvcount, recvtype, root, system_tag, comm, MPI_STATUS_IGNORE); } else { - sendsize = smpi_datatype_size(sendtype); - recvsize = smpi_datatype_size(recvtype); + // FIXME: check for errors + smpi_datatype_extent(sendtype, &lb, &sendext); // Local copy from root - memcpy(recvbuf, &((char *) sendbuf)[displs[root]], - recvcount * recvsize * sizeof(char)); + smpi_datatype_copy((char *)sendbuf + displs[root] * sendext, sendcounts[root], + sendtype, recvbuf, recvcount, recvtype); // Send buffers to receivers requests = xbt_new(MPI_Request, size - 1); index = 0; for(dst = 0; dst < size; dst++) { if(dst != root) { requests[index] = - smpi_isend_init(&((char *) sendbuf)[displs[dst]], - sendcounts[dst], sendtype, dst, system_tag, - comm); + smpi_isend_init((char *)sendbuf + displs[dst] * sendext, sendcounts[dst], + sendtype, dst, system_tag, comm); index++; } } @@ -591,7 +923,8 @@ void smpi_mpi_reduce(void *sendbuf, void *recvbuf, int count, MPI_Comm comm) { int system_tag = 666; - int rank, size, src, index, datasize; + int rank, size, src, index; + MPI_Aint lb = 0, dataext = 0; MPI_Request *requests; void **tmpbufs; @@ -601,9 +934,11 @@ void smpi_mpi_reduce(void *sendbuf, void *recvbuf, int count, // Send buffer to root smpi_mpi_send(sendbuf, count, datatype, root, system_tag, comm); } else { - datasize = smpi_datatype_size(datatype); + // FIXME: check for errors + smpi_datatype_extent(datatype, &lb, &dataext); // Local copy from root - memcpy(recvbuf, sendbuf, count * datasize * sizeof(char)); + if (sendbuf && recvbuf) + smpi_datatype_copy(sendbuf, count, datatype, recvbuf, count, datatype); // Receive buffers from senders //TODO: make a MPI_barrier here ? requests = xbt_new(MPI_Request, size - 1); @@ -611,10 +946,12 @@ void smpi_mpi_reduce(void *sendbuf, void *recvbuf, int count, index = 0; for(src = 0; src < size; src++) { if(src != root) { - tmpbufs[index] = xbt_malloc(count * datasize); + // FIXME: possibly overkill we we have contiguous/noncontiguous data + // mapping... + tmpbufs[index] = xbt_malloc(count * dataext); requests[index] = - smpi_irecv_init(tmpbufs[index], count, datatype, src, - system_tag, comm); + smpi_irecv_init(tmpbufs[index], count, datatype, src, + system_tag, comm); index++; } } @@ -622,10 +959,12 @@ void smpi_mpi_reduce(void *sendbuf, void *recvbuf, int count, smpi_mpi_startall(size - 1, requests); for(src = 0; src < size - 1; src++) { index = smpi_mpi_waitany(size - 1, requests, MPI_STATUS_IGNORE); + XBT_DEBUG("finished waiting any request with index %d", index); if(index == MPI_UNDEFINED) { break; } - smpi_op_apply(op, tmpbufs[index], recvbuf, &count, &datatype); + if(op) /* op can be MPI_OP_NULL that does nothing */ + smpi_op_apply(op, tmpbufs[index], recvbuf, &count, &datatype); } for(index = 0; index < size - 1; index++) { xbt_free(tmpbufs[index]); @@ -640,86 +979,47 @@ void smpi_mpi_allreduce(void *sendbuf, void *recvbuf, int count, { smpi_mpi_reduce(sendbuf, recvbuf, count, datatype, op, 0, comm); smpi_mpi_bcast(recvbuf, count, datatype, 0, comm); - -/* -FIXME: buggy implementation - - int system_tag = 666; - int rank, size, other, index, datasize; - MPI_Request* requests; - void** tmpbufs; - - rank = smpi_comm_rank(comm); - size = smpi_comm_size(comm); - datasize = smpi_datatype_size(datatype); - // Local copy from self - memcpy(recvbuf, sendbuf, count * datasize * sizeof(char)); - // Send/Recv buffers to/from others; - //TODO: make a MPI_barrier here ? - requests = xbt_new(MPI_Request, 2 * (size - 1)); - tmpbufs = xbt_new(void*, size - 1); - index = 0; - for(other = 0; other < size; other++) { - if(other != rank) { - tmpbufs[index / 2] = xbt_malloc(count * datasize); - requests[index] = smpi_mpi_isend(sendbuf, count, datatype, other, system_tag, comm); - requests[index + 1] = smpi_mpi_irecv(tmpbufs[index / 2], count, datatype, other, system_tag, comm); - index += 2; - } - } - // Wait for completion of all comms. - for(other = 0; other < 2 * (size - 1); other++) { - index = smpi_mpi_waitany(size - 1, requests, MPI_STATUS_IGNORE); - if(index == MPI_UNDEFINED) { - break; - } - if((index & 1) == 1) { - // Request is odd: it's a irecv - smpi_op_apply(op, tmpbufs[index / 2], recvbuf, &count, &datatype); - } - } - for(index = 0; index < size - 1; index++) { - xbt_free(tmpbufs[index]); - } - xbt_free(tmpbufs); - xbt_free(requests); -*/ } void smpi_mpi_scan(void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) { int system_tag = 666; - int rank, size, other, index, datasize; - int total; + int rank, size, other, index; + MPI_Aint lb = 0, dataext = 0; MPI_Request *requests; void **tmpbufs; rank = smpi_comm_rank(comm); size = smpi_comm_size(comm); - datasize = smpi_datatype_size(datatype); + + // FIXME: check for errors + smpi_datatype_extent(datatype, &lb, &dataext); + // Local copy from self - memcpy(recvbuf, sendbuf, count * datasize * sizeof(char)); + smpi_datatype_copy(sendbuf, count, datatype, recvbuf, count, datatype); + // Send/Recv buffers to/from others; - total = rank + (size - (rank + 1)); - requests = xbt_new(MPI_Request, total); + requests = xbt_new(MPI_Request, size - 1); tmpbufs = xbt_new(void *, rank); index = 0; for(other = 0; other < rank; other++) { - tmpbufs[index] = xbt_malloc(count * datasize); + // FIXME: possibly overkill we we have contiguous/noncontiguous data + // mapping... + tmpbufs[index] = xbt_malloc(count * dataext); requests[index] = - smpi_irecv_init(tmpbufs[index], count, datatype, other, system_tag, - comm); + smpi_irecv_init(tmpbufs[index], count, datatype, other, system_tag, + comm); index++; } for(other = rank + 1; other < size; other++) { requests[index] = - smpi_isend_init(sendbuf, count, datatype, other, system_tag, comm); + smpi_isend_init(sendbuf, count, datatype, other, system_tag, comm); index++; } // Wait for completion of all comms. smpi_mpi_startall(size - 1, requests); - for(other = 0; other < total; other++) { + for(other = 0; other < size - 1; other++) { index = smpi_mpi_waitany(size - 1, requests, MPI_STATUS_IGNORE); if(index == MPI_UNDEFINED) { break; @@ -729,7 +1029,7 @@ void smpi_mpi_scan(void *sendbuf, void *recvbuf, int count, smpi_op_apply(op, tmpbufs[index], recvbuf, &count, &datatype); } } - for(index = 0; index < size - 1; index++) { + for(index = 0; index < rank; index++) { xbt_free(tmpbufs[index]); } xbt_free(tmpbufs);