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[simgrid.git] / buildtools / Cmake / DefinePackages.cmake
index 0f4a26f..bb7460c 100644 (file)
@@ -1,16 +1,14 @@
 ### define source packages
 
 set(EXTRA_DIST
-  src/amok/Bandwidth/bandwidth_private.h
-  src/amok/amok_modinter.h
-  src/gras/Transport/transport_interface.h
-  src/gras/Virtu/virtu_interface.h
-  src/gras/Virtu/virtu_private.h
-  src/gras/Virtu/virtu_rl.h
-  src/gras/Virtu/virtu_sg.h
+  include/xbt/win32_ucontext.h
+  src/bindings/java/MANIFEST.MF
+  src/include/instr/instr_interface.h
   src/include/mc/datatypes.h
   src/include/mc/mc.h
   src/include/simgrid/platf_interface.h
+  src/include/simgrid/sg_config.h
+  src/include/smpi/smpi_interface.h
   src/include/surf/datatypes.h
   src/include/surf/maxmin.h
   src/include/surf/random_mgr.h
@@ -40,7 +38,6 @@ set(EXTRA_DIST
   src/smpi/private.h
   src/smpi/smpi_mpi_dt_private.h
   src/surf/cpu_ti_private.h
-  src/surf/platf_generator_private.h
   src/surf/gtnets/gtnets_interface.h
   src/surf/gtnets/gtnets_simulator.h
   src/surf/gtnets/gtnets_topology.h
@@ -52,6 +49,7 @@ set(EXTRA_DIST
   src/surf/ns3/ns3_interface.h
   src/surf/ns3/ns3_simulator.h
   src/surf/ns3/red-queue.h
+  src/surf/platf_generator_private.h
   src/surf/simgrid.dtd
   src/surf/simgrid_dtd.c
   src/surf/storage_private.h
@@ -59,6 +57,7 @@ set(EXTRA_DIST
   src/surf/surf_routing_private.h
   src/surf/surfxml_parse.c
   src/surf/trace_mgr_private.h
+  src/win32/config.h
   src/xbt/automaton/automaton_lexer.yy.c
   src/xbt/automaton/parserPromela.lex
   src/xbt/automaton/parserPromela.tab.cacc
@@ -67,8 +66,6 @@ set(EXTRA_DIST
   src/xbt/backtrace_dummy.c
   src/xbt/backtrace_linux.c
   src/xbt/backtrace_windows.c
-  src/xbt/datadesc/ddt_parse.yy.h
-  src/xbt/datadesc/ddt_parse.yy.l
   src/xbt/dict_private.h
   src/xbt/ex_interface.h
   src/xbt/fifo_private.h
@@ -92,22 +89,13 @@ set(EXTRA_DIST
   src/xbt/mmalloc/mmtrace.awk
   src/xbt/mmalloc/mrealloc.c
   src/xbt/setset_private.h
-  tools/gras/gras_stub_generator.h
+  src/xbt/win32_ucontext.c
   tools/tesh/run_context.h
   tools/tesh/tesh.h
   )
 
-set(XBT_RL_SRC
-  src/xbt/xbt_rl_synchro.c
-  src/xbt/xbt_rl_time.c
-  )
-
-set(XBT_SG_SRC
-  src/xbt/xbt_sg_synchro.c
-  src/xbt/xbt_sg_time.c
-  )
-
 set(SMPI_SRC
+  src/smpi/instr_smpi.c
   src/smpi/smpi_base.c
   src/smpi/smpi_bench.c
   src/smpi/smpi_c99.c
@@ -120,7 +108,7 @@ set(SMPI_SRC
   src/smpi/smpi_pmpi.c
   src/smpi/smpi_replay.c
   )
-  
+
 if(SMPI_F2C)
   set(SMPI_SRC
     ${SMPI_SRC}
@@ -133,33 +121,13 @@ else()
   )
 endif()
 
-set(GRAS_RL_SRC
-  ${XBT_RL_SRC}
-  src/gras/Msg/rl_msg.c
-  src/gras/Transport/rl_transport.c
-  src/gras/Virtu/rl_dns.c
-  src/gras/Virtu/rl_emul.c
-  src/gras/Virtu/rl_process.c
-  src/gras/rl_stubs.c
-  src/xbt/xbt_os_thread.c
-  )
 
 set(XBT_SRC
-  src/gras_modinter.h
   src/xbt/RngStream.c
   src/xbt/automaton/automaton.c
   src/xbt/automaton/automatonparse_promela.c
   src/xbt/config.c
   src/xbt/cunit.c
-  src/xbt/datadesc/cbps.c
-  src/xbt/datadesc/datadesc.c
-  src/xbt/datadesc/datadesc_interface.h
-  src/xbt/datadesc/datadesc_private.h
-  src/xbt/datadesc/ddt_convert.c
-  src/xbt/datadesc/ddt_create.c
-  src/xbt/datadesc/ddt_exchange.c
-  src/xbt/datadesc/ddt_parse.c
-  src/xbt/datadesc/ddt_parse.yy.c
   src/xbt/dict.c
   src/xbt/dict_cursor.c
   src/xbt/dict_elm.c
@@ -187,13 +155,10 @@ set(XBT_SRC
   src/xbt/xbt_peer.c
   src/xbt/xbt_queue.c
   src/xbt/xbt_replay.c
+  src/xbt/xbt_sg_synchro.c
   src/xbt/xbt_sha.c
-  src/xbt/xbt_socket.c
-  src/xbt/xbt_socket_private.h
   src/xbt/xbt_str.c
   src/xbt/xbt_strbuff.c
-  src/xbt/xbt_synchro.c
-  src/xbt/xbt_trp_plugin_tcp.c
   src/xbt/xbt_virtu.c
   src/xbt_modinter.h
   )
@@ -224,6 +189,8 @@ set(SURF_SRC
   src/surf/cpu_cas01.c
   src/surf/cpu_ti.c
   src/surf/fair_bottleneck.c
+  src/surf/instr_routing.c
+  src/surf/instr_surf.c
   src/surf/lagrange.c
   src/surf/maxmin.c
   src/surf/network.c
@@ -234,7 +201,6 @@ set(SURF_SRC
   src/surf/storage.c
   src/surf/surf.c
   src/surf/surf_action.c
-  src/surf/surf_config.c
   src/surf/surf_model.c
   src/surf/surf_routing.c
   src/surf/surf_routing_cluster.c
@@ -269,9 +235,15 @@ set(SIMIX_SRC
   src/simix/smx_user.c
   )
 
+set(SIMGRID_SRC
+  src/simgrid/sg_config.c
+  )
+
 set(MSG_SRC
+  src/msg/instr_msg_process.c
+  src/msg/instr_msg_task.c
+  src/msg/instr_msg_vm.c
   src/msg/msg_actions.c
-  src/msg/msg_config.c
   src/msg/msg_deployment.c
   src/msg/msg_environment.c
   src/msg/msg_global.c
@@ -315,6 +287,7 @@ set(EXTRA_DIST
 #* ****************************************************************************************** *#
 
 set(SIMDAG_SRC
+  src/simdag/instr_sd_task.c
   src/simdag/sd_daxloader.c
   src/simdag/sd_global.c
   src/simdag/sd_link.c
@@ -331,40 +304,6 @@ else()
     )
 endif()
 
-set(GRAS_COMMON_SRC
-  src/gras/Msg/gras_msg_exchange.c
-  src/gras/Msg/gras_msg_listener.c
-  src/gras/Msg/gras_msg_mod.c
-  src/gras/Msg/gras_msg_types.c
-  src/gras/Msg/msg_interface.h
-  src/gras/Msg/msg_private.h
-  src/gras/Msg/rpc.c
-  src/gras/Msg/timer.c
-  src/gras/Transport/transport.c
-  src/gras/Transport/transport_plugin_file.c
-  src/gras/Transport/transport_private.h
-  src/gras/Virtu/gras_module.c
-  src/gras/Virtu/process.c
-  src/gras/gras.c
-  )
-
-set(GRAS_SG_SRC
-  ${XBT_SG_SRC}
-  src/gras/Msg/sg_msg.c
-  src/gras/Transport/sg_transport.c
-  src/gras/Transport/transport_plugin_sg.c
-  src/gras/Virtu/sg_dns.c
-  src/gras/Virtu/sg_emul.c
-  src/gras/Virtu/sg_process.c
-  )
-
-set(AMOK_SRC
-  src/amok/Bandwidth/bandwidth.c
-  src/amok/Bandwidth/saturate.c
-  src/amok/PeerManagement/peermanagement.c
-  src/amok/amok_base.c
-  )
-
 set(BINDINGS_SRC
   src/bindings/bindings_global.c
   src/bindings/lua/lua_private.h
@@ -373,13 +312,78 @@ set(BINDINGS_SRC
   src/bindings/lua/simgrid_lua.h
   )
 
+set(JMSG_C_SRC
+  src/bindings/java/jmsg.c
+  src/bindings/java/jmsg.h
+  src/bindings/java/jmsg_comm.c
+  src/bindings/java/jmsg_comm.h
+  src/bindings/java/jmsg_file.c
+  src/bindings/java/jmsg_file.h
+  src/bindings/java/jmsg_host.c
+  src/bindings/java/jmsg_host.h
+  src/bindings/java/jmsg_process.c
+  src/bindings/java/jmsg_process.h
+  src/bindings/java/jmsg_rngstream.c
+  src/bindings/java/jmsg_rngstream.h
+  src/bindings/java/jmsg_synchro.c
+  src/bindings/java/jmsg_synchro.h
+  src/bindings/java/jmsg_task.c
+  src/bindings/java/jmsg_task.h
+  src/bindings/java/jmsg_vm.c
+  src/bindings/java/jmsg_vm.h
+  src/bindings/java/jxbt_utilities.c
+  src/bindings/java/jxbt_utilities.h
+  src/bindings/java/smx_context_cojava.c
+  src/bindings/java/smx_context_cojava.h
+  src/bindings/java/smx_context_java.c
+  src/bindings/java/smx_context_java.h
+)
+
+set(JMSG_JAVA_SRC
+  src/bindings/java/org/simgrid/msg/Comm.java
+  src/bindings/java/org/simgrid/msg/File.java
+  src/bindings/java/org/simgrid/msg/Host.java
+  src/bindings/java/org/simgrid/msg/HostFailureException.java
+  src/bindings/java/org/simgrid/msg/HostNotFoundException.java
+  src/bindings/java/org/simgrid/msg/JniException.java
+  src/bindings/java/org/simgrid/msg/Msg.java
+  src/bindings/java/org/simgrid/msg/MsgException.java
+  src/bindings/java/org/simgrid/msg/Mutex.java
+  src/bindings/java/org/simgrid/msg/NativeException.java
+  src/bindings/java/org/simgrid/msg/Process.java
+  src/bindings/java/org/simgrid/msg/ProcessKilledError.java
+  src/bindings/java/org/simgrid/msg/ProcessNotFoundException.java
+  src/bindings/java/org/simgrid/msg/RngStream.java
+  src/bindings/java/org/simgrid/msg/Task.java
+  src/bindings/java/org/simgrid/msg/TaskCancelledException.java
+  src/bindings/java/org/simgrid/msg/TimeoutException.java
+  src/bindings/java/org/simgrid/msg/TransferFailureException.java
+  src/bindings/java/org/simgrid/msg/VM.java
+)
+
+set(JTRACE_C_SRC
+  src/bindings/java/jtrace.c
+  src/bindings/java/jtrace.h
+)
+
+set(JTRACE_JAVA_SRC
+  src/bindings/java/org/simgrid/trace/Trace.java
+)
+
+if(HAVE_TRACING)
+  list(APPEND JMSG_C_SRC ${JTRACE_C_SRC})
+  list(APPEND JMSG_JAVA_SRC ${JTRACE_JAVA_SRC})
+else()
+  list(APPEND EXTRA_DIST ${JTRACE_C_SRC})
+  list(APPEND EXTRA_DIST ${JTRACE_JAVA_SRC})
+endif()
+
 set(LUA_SRC
   src/bindings/lua/lua_comm.c
   src/bindings/lua/lua_host.c
   src/bindings/lua/lua_platf.c
   src/bindings/lua/lua_process.c
   src/bindings/lua/lua_state_cloner.c
-  src/bindings/lua/lua_stub_generator.c
   src/bindings/lua/lua_task.c
   src/bindings/lua/lua_utils.c
   src/bindings/lua/simgrid_lua.c
@@ -388,8 +392,6 @@ set(LUA_SRC
 set(TRACING_SRC
   src/instr/instr_config.c
   src/instr/instr_interface.c
-  src/instr/instr_msg_process.c
-  src/instr/instr_msg_task.c
   src/instr/instr_paje_containers.c
   src/instr/instr_paje_trace.c
   src/instr/instr_paje_header.c
@@ -397,9 +399,6 @@ set(TRACING_SRC
   src/instr/instr_paje_values.c
   src/instr/instr_private.h
   src/instr/instr_resource_utilization.c
-  src/instr/instr_routing.c
-  src/instr/instr_smpi.c
-  src/instr/instr_surf.c
   )
 
 set(JEDULE_SRC
@@ -424,20 +423,9 @@ set(MC_SRC
   src/mc/mc_request.c
   src/mc/mc_state.c
   src/mc/memory_map.c
-  src/mc/test/heap_comparison.c
   )
 
 set(headers_to_install
-  include/amok/bandwidth.h
-  include/amok/peermanagement.h
-  include/gras.h
-  include/gras/emul.h
-  include/gras/messages.h
-  include/gras/module.h
-  include/gras/process.h
-  include/gras/timer.h
-  include/gras/transport.h
-  include/gras/virtu.h
   include/instr/instr.h
   include/msg/datatypes.h
   include/msg/msg.h
@@ -451,6 +439,7 @@ set(headers_to_install
   include/smpi/mpif.h
   include/smpi/smpi.h
   include/smpi/smpi_cocci.h
+  include/smpi/smpi_main.h
   include/surf/simgrid_dtd.h
   include/surf/surf_routing.h
   include/surf/surfxml_parse.h
@@ -460,7 +449,6 @@ set(headers_to_install
   include/xbt/automaton.h
   include/xbt/config.h
   include/xbt/cunit.h
-  include/xbt/datadesc.h
   include/xbt/dict.h
   include/xbt/dynar.h
   include/xbt/ex.h
@@ -485,14 +473,11 @@ set(headers_to_install
   include/xbt/replay.h
   include/xbt/set.h
   include/xbt/setset.h
-  include/xbt/socket.h
   include/xbt/str.h
   include/xbt/strbuff.h
   include/xbt/swag.h
-  include/xbt/synchro.h
   include/xbt/synchro_core.h
   include/xbt/sysdep.h
-  include/xbt/time.h
   include/xbt/virtu.h
   include/xbt/xbt_os_thread.h
   )
@@ -544,20 +529,41 @@ endif()
 
 ### Simgrid Lib sources
 set(simgrid_sources
-  ${AMOK_SRC}
   ${BINDINGS_SRC}
-  ${GRAS_COMMON_SRC}
-  ${GRAS_SG_SRC}
   ${GTNETS_USED}
-  ${JEDULE_SRC}
   ${MSG_SRC}
   ${SIMDAG_SRC}
+  ${SIMGRID_SRC}
   ${SIMIX_SRC}
   ${SURF_SRC}
   ${TRACING_SRC}
   ${XBT_SRC}
   )
 
+if(${HAVE_JEDULE})
+  set(simgrid_sources
+    ${simgrid_sources}
+    ${JEDULE_SRC}
+    )
+else()
+  set(EXTRA_DIST
+    ${EXTRA_DIST}
+    ${JEDULE_SRC}
+    )
+endif()
+
+if(${HAVE_TRACING})
+  set(simgrid_sources
+    ${simgrid_sources}
+    ${TRACING_SRC}
+    )
+else()
+  set(EXTRA_DIST
+    ${EXTRA_DIST}
+    ${TRACING_SRC}
+    )
+endif()
+
 if(HAVE_MC)
   set(simgrid_sources
     ${simgrid_sources}
@@ -582,14 +588,6 @@ if(WIN32)
     )
 endif()
 
-### Gras Lib sources
-set(gras_sources
-  ${AMOK_SRC}
-  ${GRAS_COMMON_SRC}
-  ${GRAS_RL_SRC}
-  ${XBT_SRC}
-  )
-
 if(${HAVE_LUA})
   set(simgrid_sources
     ${simgrid_sources}
@@ -603,233 +601,115 @@ else()
 endif()
 
 set(DOC_SOURCES
-  doc/amok_bw_sat.png
-  doc/amok_bw_test.png
   doc/AS_hierarchy.png
-  doc/gras_comm.png
+  doc/Doxyfile.in
+  doc/Layout.xml
   doc/sg_thread_model.fig
   doc/simix.fig
   doc/surf_nutshell.fig
-  doc/Doxyfile.in
-  doc/FAQ.doc
-  doc/index.doc
-  doc/simgrid.css
-  doc/SimgridDoxygenLayout.xml
   doc/triva-graph_configuration.png
+  doc/triva-graph_configuration.svg
   doc/triva-graph_visualization.png
+  doc/triva-graph_visualization.svg
   doc/triva-time_interval.png
+  doc/triva-time_interval.svg
+
+  doc/HelloWorld/CMakeLists.txt
+  doc/HelloWorld/HelloWorld.c
+  doc/HelloWorld/FindPcreWin.cmake
+  doc/HelloWorld/README
+
+  doc/doxygen/FAQ.doc
+  doc/doxygen/advanced.doc
+  doc/doxygen/bindings.doc
+  doc/doxygen/contributing.doc
+  doc/doxygen/deployment.doc
+  doc/doxygen/footer.html
+  doc/doxygen/getting_started.doc
+  doc/doxygen/header.html
+  doc/doxygen/help.doc
+  doc/doxygen/index.doc
+  doc/doxygen/inside_autotests.doc
+  doc/doxygen/inside_cmake.doc
+  doc/doxygen/inside_doxygen.doc
+  doc/doxygen/inside_extending.doc
+  doc/doxygen/inside_release.doc
+  doc/doxygen/install.doc
+  doc/doxygen/internals.doc
+  doc/doxygen/introduction.doc
+  doc/doxygen/module-msg.doc
+  doc/doxygen/module-sd.doc
+  doc/doxygen/module-simix.doc
+  doc/doxygen/module-surf.doc
+  doc/doxygen/module-trace.doc
+  doc/doxygen/module-xbt.doc
+  doc/doxygen/modules.doc
+  doc/doxygen/options.doc
+  doc/doxygen/platform.doc
+  doc/doxygen/pls.doc
+  doc/doxygen/stylesheet.css
+  doc/doxygen/tracing.doc
+  doc/doxygen/use.doc
+
+  doc/msg-tuto-src/deployment0.xml
+  doc/msg-tuto-src/deployment1.xml
+  doc/msg-tuto-src/deployment2.xml
+  doc/msg-tuto-src/deployment3.xml
+  doc/msg-tuto-src/deployment_general.xml
+  doc/msg-tuto-src/masterworker0.c
+  doc/msg-tuto-src/masterworker1.c
+  doc/msg-tuto-src/masterworker2.c
+  doc/msg-tuto-src/masterworker3.c
+  doc/msg-tuto-src/masterworker4.c
+  doc/msg-tuto-src/platforms/cloud.xml
+  doc/msg-tuto-src/platforms/g5k.xml
+  doc/msg-tuto-src/platforms/griffon.xml
+  doc/msg-tuto-src/platforms/peers.xml
+  doc/msg-tuto-src/platforms/platform.xml
   )
 
 set(DOC_FIGS
   ${CMAKE_HOME_DIRECTORY}/doc/shared/fig/simgrid_modules.fig
   ${CMAKE_HOME_DIRECTORY}/doc/shared/fig/simgrid_modules2.fig
   )
-  
-set(DOC_SHARED_TAG
-  doc/shared/doxygen/simgriddevguide.tag
-  doc/shared/doxygen/simgridrefguide.tag
-  doc/shared/doxygen/simgriduserguide.tag
-  )
-  
+
 set(DOC_TOOLS
   tools/doxygen/fig2dev_postprocessor.pl
   tools/doxygen/index_create.pl
   tools/doxygen/xbt_log_extract_hierarchy.pl
   )
 
-set(DOC_GTUT_SRC
-  doc/gtut-files/01-bones.c
-  doc/gtut-files/01-bones.output
-  doc/gtut-files/02-simple.c
-  doc/gtut-files/02-simple.output
-  doc/gtut-files/03-args.c
-  doc/gtut-files/03-args.output
-  doc/gtut-files/03-args.xml
-  doc/gtut-files/04-callback.c
-  doc/gtut-files/04-callback.output
-  doc/gtut-files/05-globals.c
-  doc/gtut-files/05-globals.output
-  doc/gtut-files/06-logs.c
-  doc/gtut-files/06-logs.output
-  doc/gtut-files/06-logs.output.error
-  doc/gtut-files/06-logs.output.fmt
-  doc/gtut-files/06-logs.output.fmt-bt
-  doc/gtut-files/06-logs.output.verbose
-  doc/gtut-files/07-timers.c
-  doc/gtut-files/07-timers.output
-  doc/gtut-files/08-exceptions.c
-  doc/gtut-files/08-exceptions.output
-  doc/gtut-files/09-datatype-dump.c
-  doc/gtut-files/09-simpledata.c
-  doc/gtut-files/09-simpledata.output
-  doc/gtut-files/10-rpc.c
-  doc/gtut-files/10-rpc.output
-  doc/gtut-files/11-explicitwait.c
-  doc/gtut-files/11-explicitwait.output
-  doc/gtut-files/11-explicitwait.xml
-  doc/gtut-files/gtut-platform-3nodes.xml
-  doc/gtut-files/gtut-platform.xml
-  doc/gtut-files/Makefile
-  doc/gtut-files/README
-  doc/gtut-files/test.xml
-)
-
-set(USER_GUIDE_SOURCES
-  doc/user_guide/doxygen/footer.html
-  doc/user_guide/doxygen/header.html
-  doc/user_guide/doxygen/UserGuideDoxyfile.in
-  doc/user_guide/doxygen/UserGuideDoxygenLayout.xml
-  doc/user_guide/doxygen/bindings.doc
-  doc/user_guide/doxygen/deployment.doc
-  doc/user_guide/doxygen/examples.doc
-  doc/user_guide/doxygen/index.doc
-  doc/user_guide/doxygen/install.doc
-  doc/user_guide/doxygen/options.doc
-  doc/user_guide/doxygen/platform.doc
-  doc/user_guide/doxygen/pls.doc
-  doc/user_guide/doxygen/tracing.doc
-  doc/user_guide/doxygen/use.doc
-  doc/user_guide/doxygen/stylesheet.css
-  )
-  
-set(LISTE_GTUT
-    doc/gtut-files/gtut-tour-00-install.doc
-    doc/gtut-files/gtut-tour-01-bones.doc
-    doc/gtut-files/gtut-tour-02-simple.doc
-    doc/gtut-files/gtut-tour-03-args.doc
-    doc/gtut-files/gtut-tour-04-callback.doc
-    doc/gtut-files/gtut-tour-05-globals.doc
-    doc/gtut-files/gtut-tour-06-logs.doc
-    doc/gtut-files/gtut-tour-07-timers.doc
-    doc/gtut-files/gtut-tour-08-exceptions.doc
-    doc/gtut-files/gtut-tour-09-simpledata.doc
-    doc/gtut-files/gtut-tour-10-rpc.doc
-    doc/gtut-files/gtut-tour-11-explicitwait.doc
-    doc/gtut-files/gtut-tour-12-staticstruct.doc
-    doc/gtut-files/gtut-tour-13-pointers.doc
-    doc/gtut-files/gtut-tour-14-dynar.doc
-    doc/gtut-files/gtut-tour-15-manualdatadef.doc
-    doc/gtut-files/gtut-tour-16-exchangecb.doc
-    doc/gtut-files/gtut-tour.doc
-    doc/gtut-files/gtut-tour-recap-messages.doc
-  )
-
-set(EXTRA_LISTE_GTUT
-    doc/gtut-files/01-bones.output
-    doc/gtut-files/02-simple.output
-    doc/gtut-files/03-args.output
-    doc/gtut-files/03-args.xml
-    doc/gtut-files/04-callback.output
-    doc/gtut-files/05-globals.output
-    doc/gtut-files/06-logs.output
-    doc/gtut-files/06-logs.output.error
-    doc/gtut-files/06-logs.output.fmt
-    doc/gtut-files/06-logs.output.fmt-bt
-    doc/gtut-files/06-logs.output.verbose
-    doc/gtut-files/07-timers.output
-    doc/gtut-files/08-exceptions.output
-    doc/gtut-files/09-simpledata.output
-    doc/gtut-files/10-rpc.output
-    doc/gtut-files/11-explicitwait.output
-    doc/gtut-files/11-explicitwait.xml
-    doc/gtut-files/gtut-howto-design.doc
-    doc/gtut-files/gtut-howto.doc
-    doc/gtut-files/gtut-introduction.doc
-    doc/gtut-files/gtut-main.doc
-    doc/gtut-files/gtut-platform-3nodes.xml
-    doc/gtut-files/gtut-platform.xml
-    doc/gtut-files/README
-    doc/gtut-files/test.xml
-    )
-  
-set(REF_GUIDE_SOURCES
-  doc/ref_guide/doxygen/footer.html
-  doc/ref_guide/doxygen/header.html
-  doc/ref_guide/doxygen/main.doc
-  doc/ref_guide/doxygen/module-amok.doc
-  doc/ref_guide/doxygen/module-gras.doc
-  doc/ref_guide/doxygen/module-msg.doc
-  doc/ref_guide/doxygen/module-sd.doc
-  doc/ref_guide/doxygen/module-simix.doc
-  doc/ref_guide/doxygen/module-surf.doc
-  doc/ref_guide/doxygen/module-trace.doc
-  doc/ref_guide/doxygen/module-xbt.doc
-  doc/ref_guide/doxygen/modules.doc
-  doc/ref_guide/doxygen/RefGuideDoxyfile.in
-  doc/ref_guide/doxygen/RefGuideDoxygenLayout.xml
-  doc/ref_guide/doxygen/stylesheet.css
-  )
-
-set(DEV_GUIDE_SOURCES
-  doc/dev_guide/doxygen/footer.html
-  doc/dev_guide/doxygen/header.html
-  doc/dev_guide/doxygen/index.doc
-  doc/dev_guide/doxygen/cmake.doc
-  doc/dev_guide/doxygen/simgrid.doc
-  doc/dev_guide/doxygen/xps.doc
-  doc/dev_guide/doxygen/DevGuideDoxyfile.in
-  doc/dev_guide/doxygen/DevGuideDoxygenLayout.xml
-  doc/dev_guide/doxygen/stylesheet.css
-  )
-
+# these files get copied automatically to the html documentation
 set(DOC_IMG
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/awstats_logo3.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/Paje_MSG_screenshot.jpg
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/Paje_MSG_screenshot_thn.jpg
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/poster_thumbnail.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/README
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/SGicon.gif
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/SGicon.icns
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/SGicon.ico
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_001.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_002.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_003.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_004.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_005.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_006.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_007.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_008.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_009.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_010.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_011.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_012.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_013.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_014.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_015.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_016.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_017.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_018.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_019.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_020.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_021.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_022.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_023.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_024.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_025.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_026.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_027.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_028.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_029.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_030.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101.pdf
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_2011.gif
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_2011.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_2011_small.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_win_2011.bmp
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_win.bmp
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_01.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_02.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_03.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_04.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_05.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_06.png
-)
+  ${CMAKE_HOME_DIRECTORY}/doc/simgrid.css
+  ${CMAKE_HOME_DIRECTORY}/doc/sc3-description.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/Paje_MSG_screenshot.jpg
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/Paje_MSG_screenshot_thn.jpg
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/SGicon.gif
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/SGicon.icns
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/SGicon.ico
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/awstats_logo3.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/output.goal.pdf
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/poster_thumbnail.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_2011.gif
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_2011.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_2011_small.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_win.bmp
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_win_2011.bmp
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_01.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_02.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_03.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_04.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_05.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_06.png
+  )
 
 set(bin_files
   ${bin_files}
   src/smpi/smpicc.in
   src/smpi/smpif2c.in
   src/smpi/smpiff.in
+  src/smpi/smpif90.in
   src/smpi/smpirun.in
   )
 
@@ -837,7 +717,10 @@ set(txt_files
   ${txt_files}
   AUTHORS
   COPYING
+  README
+  README.java
   ChangeLog
+  ChangeLog.SimGrid-java
   INSTALL
   LICENSE-LGPL-2.1
   NEWS
@@ -846,20 +729,24 @@ set(txt_files
   )
 
 set(EXAMPLES_CMAKEFILES_TXT
-  examples/amok/bandwidth/CMakeLists.txt
-  examples/amok/saturate/CMakeLists.txt
-  examples/gras/all2all/CMakeLists.txt
-  examples/gras/chrono/CMakeLists.txt
-  examples/gras/console/CMakeLists.txt
-  examples/gras/mmrpc/CMakeLists.txt
-  examples/gras/mutual_exclusion/simple_token/CMakeLists.txt
-  examples/gras/ping/CMakeLists.txt
-  examples/gras/pmm/CMakeLists.txt
-  examples/gras/properties/CMakeLists.txt
-  examples/gras/rpc/CMakeLists.txt
-  examples/gras/spawn/CMakeLists.txt
-  examples/gras/synchro/CMakeLists.txt
-  examples/gras/timer/CMakeLists.txt
+  examples/java/CMakeLists.txt
+  examples/java/async/CMakeLists.txt
+  examples/java/bittorrent/CMakeLists.txt
+  examples/java/chord/CMakeLists.txt
+  examples/java/cloud/CMakeLists.txt
+  examples/java/commTime/CMakeLists.txt
+  examples/java/io/CMakeLists.txt
+  examples/java/kademlia/CMakeLists.txt
+  examples/java/master_slave_bypass/CMakeLists.txt
+  examples/java/master_slave_kill/CMakeLists.txt
+  examples/java/masterslave/CMakeLists.txt
+  examples/java/migration/CMakeLists.txt
+  examples/java/mutualExclusion/CMakeLists.txt
+  examples/java/pingPong/CMakeLists.txt
+  examples/java/priority/CMakeLists.txt
+  examples/java/startKillTime/CMakeLists.txt
+  examples/java/suspend/CMakeLists.txt
+  examples/java/tracing/CMakeLists.txt
   examples/lua/CMakeLists.txt
   examples/msg/CMakeLists.txt
   examples/msg/actions/CMakeLists.txt
@@ -880,6 +767,7 @@ set(EXAMPLES_CMAKEFILES_TXT
   examples/msg/priority/CMakeLists.txt
   examples/msg/properties/CMakeLists.txt
   examples/msg/sendrecv/CMakeLists.txt
+  examples/msg/chainsend/CMakeLists.txt
   examples/msg/start_kill_time/CMakeLists.txt
   examples/msg/suspend/CMakeLists.txt
   examples/msg/token_ring/CMakeLists.txt
@@ -898,11 +786,6 @@ set(EXAMPLES_CMAKEFILES_TXT
 
 set(TESHSUITE_CMAKEFILES_TXT
   teshsuite/CMakeLists.txt
-  teshsuite/gras/CMakeLists.txt
-  teshsuite/gras/datadesc/CMakeLists.txt
-  teshsuite/gras/empty_main/CMakeLists.txt
-  teshsuite/gras/msg_handle/CMakeLists.txt
-  teshsuite/gras/small_sleep/CMakeLists.txt
   teshsuite/msg/CMakeLists.txt
   teshsuite/msg/trace/CMakeLists.txt
   teshsuite/simdag/CMakeLists.txt
@@ -911,8 +794,10 @@ set(TESHSUITE_CMAKEFILES_TXT
   teshsuite/simdag/network/p2p/CMakeLists.txt
   teshsuite/simdag/partask/CMakeLists.txt
   teshsuite/simdag/platforms/CMakeLists.txt
+  teshsuite/simdag/availability/CMakeLists.txt
   teshsuite/xbt/CMakeLists.txt
   teshsuite/smpi/CMakeLists.txt
+  teshsuite/smpi/mpich-test/CMakeLists.txt
   teshsuite/smpi/mpich-test/env/CMakeLists.txt
   teshsuite/smpi/mpich-test/coll/CMakeLists.txt
   teshsuite/smpi/mpich-test/context/CMakeLists.txt
@@ -923,7 +808,6 @@ set(TESHSUITE_CMAKEFILES_TXT
 set(TOOLS_CMAKEFILES_TXT
   tools/CMakeLists.txt
   tools/graphicator/CMakeLists.txt
-  tools/gras/CMakeLists.txt
   tools/tesh/CMakeLists.txt
   )
 
@@ -936,22 +820,22 @@ set(CMAKE_SOURCE_FILES
   CMakeLists.txt
   buildtools/Cmake/AddTests.cmake
   buildtools/Cmake/CTestConfig.cmake
+  buildtools/Cmake/CTestCustom.cmake
   buildtools/Cmake/CompleteInFiles.cmake
   buildtools/Cmake/DefinePackages.cmake
   buildtools/Cmake/Distrib.cmake
   buildtools/Cmake/Flags.cmake
   buildtools/Cmake/GenerateDoc.cmake
   buildtools/Cmake/GenerateDocWin.cmake
-  buildtools/Cmake/GenerateRefGuide.cmake
-  buildtools/Cmake/GenerateUserGuide.cmake
-  buildtools/Cmake/GenerateDevGuide.cmake
   buildtools/Cmake/MaintainerMode.cmake
   buildtools/Cmake/MakeExe.cmake
+  buildtools/Cmake/MakeJava.cmake
   buildtools/Cmake/MakeLib.cmake
   buildtools/Cmake/MakeLibWin.cmake
   buildtools/Cmake/Modules/FindF2c.cmake
   buildtools/Cmake/Modules/FindGTnets.cmake
   buildtools/Cmake/Modules/FindGraphviz.cmake
+  buildtools/Cmake/Modules/FindLibunwind.cmake
   buildtools/Cmake/Modules/FindLua51Simgrid.cmake
   buildtools/Cmake/Modules/FindNS3.cmake
   buildtools/Cmake/Modules/FindPCRE.cmake
@@ -960,7 +844,6 @@ set(CMAKE_SOURCE_FILES
   buildtools/Cmake/Modules/FindRubySimgrid.cmake
   buildtools/Cmake/Modules/FindSimGrid.cmake
   buildtools/Cmake/Modules/FindValgrind.cmake
-  buildtools/Cmake/Modules/FindLibunwind.cmake
   buildtools/Cmake/Option.cmake
   buildtools/Cmake/Pipol.cmake
   buildtools/Cmake/PrintArgs.cmake
@@ -977,13 +860,11 @@ set(CMAKE_SOURCE_FILES
   buildtools/Cmake/Scripts/update_tesh.pl
   buildtools/Cmake/Supernovae.cmake
   buildtools/Cmake/UnitTesting.cmake
-  buildtools/Cmake/src/gras_config.h.in
+  buildtools/Cmake/src/internal_config.h.in
   buildtools/Cmake/src/simgrid.nsi.in
   buildtools/Cmake/test_prog/prog_AC_CHECK_MCSC.c
-  buildtools/Cmake/test_prog/prog_GRAS_ARCH.c
-  buildtools/Cmake/test_prog/prog_GRAS_CHECK_STRUCT_COMPACTION.c
-  buildtools/Cmake/test_prog/prog_getline.c
-  buildtools/Cmake/test_prog/prog_max_size.c
+  buildtools/Cmake/test_prog/prog_gnu_dynlinker.c
+  buildtools/Cmake/test_prog/prog_gtnets.cpp
   buildtools/Cmake/test_prog/prog_mutex_timedlock.c
   buildtools/Cmake/test_prog/prog_printf_null.c
   buildtools/Cmake/test_prog/prog_sem_init.c
@@ -993,7 +874,6 @@ set(CMAKE_SOURCE_FILES
   buildtools/Cmake/test_prog/prog_stackgrowth.c
   buildtools/Cmake/test_prog/prog_stacksetup.c
   buildtools/Cmake/test_prog/prog_thread_storage.c
-  buildtools/Cmake/test_prog/prog_va_copy.c
   buildtools/Cmake/test_prog/prog_vsnprintf.c
   )
 
@@ -1020,8 +900,10 @@ set(PLATFORMS_EXAMPLES
   examples/platforms/generation_scripts/generate_g5k_platform.pl
   examples/platforms/generation_scripts/generate_g5k_platform_cabinets.pl
   examples/platforms/griffon.xml
+  examples/platforms/meta_cluster.xml
   examples/platforms/multicore_machine.xml
   examples/platforms/prop.xml
+  examples/platforms/routing_cluster.xml
   examples/platforms/storage.xml
   examples/platforms/syscoord/generate_peer_platform.pl
   examples/platforms/syscoord/median_harvard.syscoord
@@ -1030,14 +912,11 @@ set(PLATFORMS_EXAMPLES
   examples/platforms/syscoord/median_meridian.xml
   examples/platforms/syscoord/median_p2psim.syscoord
   examples/platforms/syscoord/median_p2psim.xml
-  examples/platforms/vivaldi.xml
-  examples/platforms/routing_cluster.xml
-  examples/platforms/meta_cluster.xml
   examples/platforms/two_peers.xml
+  examples/platforms/vivaldi.xml
   )
 
 set(generated_src_files
-  ${CMAKE_HOME_DIRECTORY}/src/xbt/datadesc/ddt_parse.yy.c
   src/xbt/automaton/automaton_lexer.yy.c
   src/xbt/automaton/parserPromela.tab.cacc
   src/xbt/automaton/parserPromela.tab.hacc