doxygen fixups

[simgrid.git] / doc / Doxyfile.in

diff --git a/doc/Doxyfile.in b/doc/Doxyfile.in
index bde45d2..2ec75dd 100644 (file)
--- a/doc/Doxyfile.in
+++ b/doc/Doxyfile.in
@@ -659,9 +659,13 @@ INPUT                  = doxygen/index.doc \
                           doxygen/outcomes_logs.doc \
                           doxygen/outcomes_vizu.doc \
                           doxygen/outcomes_MC.doc \
-                         doxygen/tutorial.doc \
+                         doxygen/tutorial_msg.doc \
+                         doxygen/tutorial_smpi.doc \
                          doxygen/examples.doc \
+                        doxygen/howtos.doc \
                         doxygen/uhood.doc \
+                          doxygen/uhood_arch.doc \
+                          doxygen/uhood_switch.doc \
                           doxygen/inside.doc \
                             doxygen/inside_doxygen.doc \
                             doxygen/inside_extending.doc \
@@ -669,10 +673,6 @@ INPUT                  = doxygen/index.doc \
                             doxygen/inside_tests.doc \
                             doxygen/inside_release.doc \
                         doxygen/community.doc \
-                           doxygen/community_contact.doc \
-                          doxygen/community_contributing.doc \
-                          doxygen/community_extend.doc \
-                           doxygen/community_giveback.doc \
                         doxygen/FAQ.doc \
                         doxygen/module-msg.doc \
                         doxygen/module-sd.doc \
@@ -684,23 +684,28 @@ INPUT                  = doxygen/index.doc \
                            doxygen/module-smpi.doc \
                            doxygen/module-trace.doc \
                          @CMAKE_HOME_DIRECTORY@/doc/doxygen/logcategories.doc \
-                         @CMAKE_HOME_DIRECTORY@/src/instr/ \
                          @CMAKE_HOME_DIRECTORY@/include/ \
                          @CMAKE_HOME_DIRECTORY@/include/xbt \
                          @CMAKE_HOME_DIRECTORY@/include/simgrid \
                          @CMAKE_HOME_DIRECTORY@/include/simgrid/s4u \
                          @CMAKE_HOME_DIRECTORY@/src/include/surf \
-                         @CMAKE_HOME_DIRECTORY@/src/xbt/ \
+                         @CMAKE_HOME_DIRECTORY@/src/msg/ \
+                         @CMAKE_HOME_DIRECTORY@/src/kernel/ \
+                         @CMAKE_HOME_DIRECTORY@/src/kernel/activity/ \
+                         @CMAKE_HOME_DIRECTORY@/src/kernel/context/ \
+                         @CMAKE_HOME_DIRECTORY@/src/kernel/routing/ \
+                         @CMAKE_HOME_DIRECTORY@/src/instr/ \
                          @CMAKE_HOME_DIRECTORY@/src/surf/ \
                          @CMAKE_HOME_DIRECTORY@/src/surf/plugins/ \
                          @CMAKE_HOME_DIRECTORY@/src/s4u/ \
-                         @CMAKE_HOME_DIRECTORY@/src/msg/ \
                          @CMAKE_HOME_DIRECTORY@/src/smpi/ \
                          @CMAKE_HOME_DIRECTORY@/src/simdag \
                          @CMAKE_HOME_DIRECTORY@/src/simix \
+                         @CMAKE_HOME_DIRECTORY@/src/xbt/ \
                          @CMAKE_BINARY_DIR@/include \
                          @CMAKE_BINARY_DIR@/src \
-                         @CMAKE_HOME_DIRECTORY@/examples/msg/README.doc
+                         @CMAKE_HOME_DIRECTORY@/examples/msg/README.doc \
+                         @CMAKE_HOME_DIRECTORY@/examples/s4u/README.doc
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is
@@ -724,7 +729,7 @@ FILE_PATTERNS          =
 # should be searched for input files as well. Possible values are YES and NO.
 # If left blank NO is used.
 
-RECURSIVE              = NO
+RECURSIVE              = YES
 
 # The EXCLUDE tag can be used to specify files and/or directories that should be
 # excluded from the INPUT source files. This way you can easily exclude a
@@ -732,13 +737,13 @@ RECURSIVE              = NO
 # Note that relative paths are relative to the directory from which doxygen is
 # run.
 
-EXCLUDE                = 
+EXCLUDE                =
 
 # The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
 # directories that are symbolic links (a Unix file system feature) are excluded
 # from the input.
 
-EXCLUDE_SYMLINKS       = NO
+EXCLUDE_SYMLINKS       = YES
 
 # If the value of the INPUT tag contains directories, you can use the
 # EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude
@@ -762,6 +767,7 @@ EXCLUDE_SYMBOLS        =
 
 EXAMPLE_PATH           = ./ \
                          @CMAKE_HOME_DIRECTORY@/src/surf/ \
+                         @CMAKE_HOME_DIRECTORY@/src/surf/xml/ \
                          @CMAKE_HOME_DIRECTORY@/src/xbt/ \
                          @CMAKE_HOME_DIRECTORY@/examples \
                          @CMAKE_HOME_DIRECTORY@/doc/example_lists
@@ -843,7 +849,7 @@ INLINE_SOURCES         = NO
 # doxygen to hide any special comment blocks from generated source code
 # fragments. Normal C and C++ comments will always remain visible.
 
-STRIP_CODE_COMMENTS    = YES
+STRIP_CODE_COMMENTS    = NO
 
 # If the REFERENCED_BY_RELATION tag is set to YES
 # then for each documented function all documented
@@ -863,7 +869,7 @@ REFERENCES_RELATION    = NO
 # link to the source code.
 # Otherwise they will link to the documentation.
 
-REFERENCES_LINK_SOURCE = YES
+REFERENCES_LINK_SOURCE = NO
 
 # If the USE_HTAGS tag is set to YES then the references to source code
 # will point to the HTML generated by the htags(1) tool instead of doxygen