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Include TRACING_SRC only when HAVE_TRACING.
[simgrid.git] / buildtools / Cmake / DefinePackages.cmake
index f41f069..126a018 100644 (file)
@@ -1,9 +1,14 @@
 ### define source packages
 
 set(EXTRA_DIST
+  include/xbt/win32_ucontext.h
+  src/bindings/java/MANIFEST.MF
+  src/include/instr/instr_interface.h
   src/include/mc/datatypes.h
   src/include/mc/mc.h
   src/include/simgrid/platf_interface.h
+  src/include/simgrid/sg_config.h
+  src/include/smpi/smpi_interface.h
   src/include/surf/datatypes.h
   src/include/surf/maxmin.h
   src/include/surf/random_mgr.h
@@ -30,10 +35,12 @@ set(EXTRA_DIST
   src/simix/smx_smurf_private.h
   src/simix/smx_synchro_private.h
   src/smpi/README
+  src/smpi/colls/COPYRIGHTS
+  src/smpi/colls/colls.h
+  src/smpi/colls/colls_private.h
   src/smpi/private.h
   src/smpi/smpi_mpi_dt_private.h
   src/surf/cpu_ti_private.h
-  src/surf/platf_generator_private.h
   src/surf/gtnets/gtnets_interface.h
   src/surf/gtnets/gtnets_simulator.h
   src/surf/gtnets/gtnets_topology.h
@@ -45,6 +52,7 @@ set(EXTRA_DIST
   src/surf/ns3/ns3_interface.h
   src/surf/ns3/ns3_simulator.h
   src/surf/ns3/red-queue.h
+  src/surf/platf_generator_private.h
   src/surf/simgrid.dtd
   src/surf/simgrid_dtd.c
   src/surf/storage_private.h
@@ -52,6 +60,7 @@ set(EXTRA_DIST
   src/surf/surf_routing_private.h
   src/surf/surfxml_parse.c
   src/surf/trace_mgr_private.h
+  src/win32/config.h
   src/xbt/automaton/automaton_lexer.yy.c
   src/xbt/automaton/parserPromela.lex
   src/xbt/automaton/parserPromela.tab.cacc
@@ -83,11 +92,13 @@ set(EXTRA_DIST
   src/xbt/mmalloc/mmtrace.awk
   src/xbt/mmalloc/mrealloc.c
   src/xbt/setset_private.h
+  src/xbt/win32_ucontext.c
   tools/tesh/run_context.h
   tools/tesh/tesh.h
   )
 
 set(SMPI_SRC
+  src/smpi/instr_smpi.c
   src/smpi/smpi_base.c
   src/smpi/smpi_bench.c
   src/smpi/smpi_c99.c
@@ -99,8 +110,84 @@ set(SMPI_SRC
   src/smpi/smpi_mpi_dt.c
   src/smpi/smpi_pmpi.c
   src/smpi/smpi_replay.c
+  src/smpi/colls/colls_global.c
+  src/smpi/colls/allgather-2dmesh.c
+  src/smpi/colls/allgather-3dmesh.c
+  src/smpi/colls/allgather-bruck.c
+  src/smpi/colls/allgather-GB.c
+  src/smpi/colls/allgather-loosely-lr.c
+  src/smpi/colls/allgather-lr.c
+  src/smpi/colls/allgather-NTSLR.c
+  src/smpi/colls/allgather-NTSLR-NB.c
+  src/smpi/colls/allgather-pair.c
+  src/smpi/colls/allgather-rdb.c
+  src/smpi/colls/allgather-rhv.c
+  src/smpi/colls/allgather-ring.c
+  src/smpi/colls/allgather-SMP-NTS.c
+  src/smpi/colls/allgather-smp-simple.c
+  src/smpi/colls/allgather-spreading-simple.c
+  src/smpi/colls/allgatherv-GB.c  
+  src/smpi/colls/allgatherv-pair.c
+  src/smpi/colls/allgatherv-ring.c
+  src/smpi/colls/allreduce-lr.c
+  src/smpi/colls/allreduce-NTS.c
+  src/smpi/colls/allreduce-rab1.c
+  src/smpi/colls/allreduce-rab2.c
+  src/smpi/colls/allreduce-rab-rdb.c
+  #src/smpi/colls/allreduce-rab-reduce-scatter.c
+  src/smpi/colls/allreduce-rab-rsag.c
+  src/smpi/colls/allreduce-rdb.c
+  src/smpi/colls/allreduce-redbcast.c
+  src/smpi/colls/allreduce-smp-binomial.c
+  src/smpi/colls/allreduce-smp-binomial-pipeline.c
+  src/smpi/colls/allreduce-smp-rdb.c
+  src/smpi/colls/allreduce-smp-rsag.c
+  src/smpi/colls/allreduce-smp-rsag-lr.c
+  src/smpi/colls/allreduce-smp-rsag-rab.c
+  src/smpi/colls/alltoall-2dmesh.c
+  src/smpi/colls/alltoall-3dmesh.c
+  #src/smpi/colls/alltoall-bruck.c
+  src/smpi/colls/alltoall-pair.c
+  src/smpi/colls/alltoall-pair-light-barrier.c
+  src/smpi/colls/alltoall-pair-mpi-barrier.c
+  src/smpi/colls/alltoall-pair-one-barrier.c
+  src/smpi/colls/alltoall-rdb.c
+  src/smpi/colls/alltoall-ring.c
+  src/smpi/colls/alltoall-ring-light-barrier.c
+  src/smpi/colls/alltoall-ring-mpi-barrier.c
+  src/smpi/colls/alltoall-ring-one-barrier.c
+  src/smpi/colls/alltoall-simple.c
+  src/smpi/colls/alltoallv-pair.c   
+  src/smpi/colls/alltoallv-pair-light-barrier.c
+  src/smpi/colls/alltoallv-pair-mpi-barrier.c
+  src/smpi/colls/alltoallv-pair-one-barrier.c 
+  src/smpi/colls/alltoallv-ring.c
+  src/smpi/colls/alltoallv-ring-light-barrier.c
+  src/smpi/colls/alltoallv-ring-mpi-barrier.c
+  src/smpi/colls/alltoallv-ring-one-barrier.c
+  src/smpi/colls/alltoallv-bruck.c
+  src/smpi/colls/bcast-arrival-nb.c
+  src/smpi/colls/bcast-arrival-pattern-aware.c
+  src/smpi/colls/bcast-arrival-pattern-aware-wait.c
+  src/smpi/colls/bcast-arrival-scatter.c
+  src/smpi/colls/bcast-binomial-tree.c
+  src/smpi/colls/bcast-flattree.c
+  src/smpi/colls/bcast-flattree-pipeline.c
+  src/smpi/colls/bcast-NTSB.c
+  src/smpi/colls/bcast-NTSL.c
+  src/smpi/colls/bcast-NTSL-Isend.c
+  src/smpi/colls/bcast-scatter-LR-allgather.c
+  src/smpi/colls/bcast-scatter-rdb-allgather.c
+  src/smpi/colls/bcast-SMP-binary.c
+  src/smpi/colls/bcast-SMP-binomial.c
+  src/smpi/colls/bcast-SMP-linear.c
+  src/smpi/colls/reduce-arrival-pattern-aware.c
+  src/smpi/colls/reduce-binomial.c
+  src/smpi/colls/reduce-flat-tree.c
+  src/smpi/colls/reduce-NTSL.c
+  src/smpi/colls/reduce-scatter-gather.c
   )
-  
+
 if(SMPI_F2C)
   set(SMPI_SRC
     ${SMPI_SRC}
@@ -181,6 +268,8 @@ set(SURF_SRC
   src/surf/cpu_cas01.c
   src/surf/cpu_ti.c
   src/surf/fair_bottleneck.c
+  src/surf/instr_routing.c
+  src/surf/instr_surf.c
   src/surf/lagrange.c
   src/surf/maxmin.c
   src/surf/network.c
@@ -191,7 +280,6 @@ set(SURF_SRC
   src/surf/storage.c
   src/surf/surf.c
   src/surf/surf_action.c
-  src/surf/surf_config.c
   src/surf/surf_model.c
   src/surf/surf_routing.c
   src/surf/surf_routing_cluster.c
@@ -200,7 +288,6 @@ set(SURF_SRC
   src/surf/surf_routing_full.c
   src/surf/surf_routing_generic.c
   src/surf/surf_routing_none.c
-  src/surf/surf_routing_rulebased.c
   src/surf/surf_routing_vivaldi.c
   src/surf/surfxml_parse.c
   src/surf/surfxml_parseplatf.c
@@ -226,9 +313,15 @@ set(SIMIX_SRC
   src/simix/smx_user.c
   )
 
+set(SIMGRID_SRC
+  src/simgrid/sg_config.c
+  )
+
 set(MSG_SRC
+  src/msg/instr_msg_process.c
+  src/msg/instr_msg_task.c
+  src/msg/instr_msg_vm.c
   src/msg/msg_actions.c
-  src/msg/msg_config.c
   src/msg/msg_deployment.c
   src/msg/msg_environment.c
   src/msg/msg_global.c
@@ -272,6 +365,7 @@ set(EXTRA_DIST
 #* ****************************************************************************************** *#
 
 set(SIMDAG_SRC
+  src/simdag/instr_sd_task.c
   src/simdag/sd_daxloader.c
   src/simdag/sd_global.c
   src/simdag/sd_link.c
@@ -296,6 +390,72 @@ set(BINDINGS_SRC
   src/bindings/lua/simgrid_lua.h
   )
 
+set(JMSG_C_SRC
+  src/bindings/java/jmsg.c
+  src/bindings/java/jmsg.h
+  src/bindings/java/jmsg_comm.c
+  src/bindings/java/jmsg_comm.h
+  src/bindings/java/jmsg_file.c
+  src/bindings/java/jmsg_file.h
+  src/bindings/java/jmsg_host.c
+  src/bindings/java/jmsg_host.h
+  src/bindings/java/jmsg_process.c
+  src/bindings/java/jmsg_process.h
+  src/bindings/java/jmsg_rngstream.c
+  src/bindings/java/jmsg_rngstream.h
+  src/bindings/java/jmsg_synchro.c
+  src/bindings/java/jmsg_synchro.h
+  src/bindings/java/jmsg_task.c
+  src/bindings/java/jmsg_task.h
+  src/bindings/java/jmsg_vm.c
+  src/bindings/java/jmsg_vm.h
+  src/bindings/java/jxbt_utilities.c
+  src/bindings/java/jxbt_utilities.h
+  src/bindings/java/smx_context_cojava.c
+  src/bindings/java/smx_context_cojava.h
+  src/bindings/java/smx_context_java.c
+  src/bindings/java/smx_context_java.h
+)
+
+set(JMSG_JAVA_SRC
+  src/bindings/java/org/simgrid/msg/Comm.java
+  src/bindings/java/org/simgrid/msg/File.java
+  src/bindings/java/org/simgrid/msg/Host.java
+  src/bindings/java/org/simgrid/msg/HostFailureException.java
+  src/bindings/java/org/simgrid/msg/HostNotFoundException.java
+  src/bindings/java/org/simgrid/msg/JniException.java
+  src/bindings/java/org/simgrid/msg/Msg.java
+  src/bindings/java/org/simgrid/msg/MsgException.java
+  src/bindings/java/org/simgrid/msg/Mutex.java
+  src/bindings/java/org/simgrid/msg/NativeException.java
+  src/bindings/java/org/simgrid/msg/Process.java
+  src/bindings/java/org/simgrid/msg/ProcessKilledError.java
+  src/bindings/java/org/simgrid/msg/ProcessNotFoundException.java
+  src/bindings/java/org/simgrid/msg/RngStream.java
+  src/bindings/java/org/simgrid/msg/Task.java
+  src/bindings/java/org/simgrid/msg/TaskCancelledException.java
+  src/bindings/java/org/simgrid/msg/TimeoutException.java
+  src/bindings/java/org/simgrid/msg/TransferFailureException.java
+  src/bindings/java/org/simgrid/msg/VM.java
+)
+
+set(JTRACE_C_SRC
+  src/bindings/java/jtrace.c
+  src/bindings/java/jtrace.h
+)
+
+set(JTRACE_JAVA_SRC
+  src/bindings/java/org/simgrid/trace/Trace.java
+)
+
+if(HAVE_TRACING)
+  list(APPEND JMSG_C_SRC ${JTRACE_C_SRC})
+  list(APPEND JMSG_JAVA_SRC ${JTRACE_JAVA_SRC})
+else()
+  list(APPEND EXTRA_DIST ${JTRACE_C_SRC})
+  list(APPEND EXTRA_DIST ${JTRACE_JAVA_SRC})
+endif()
+
 set(LUA_SRC
   src/bindings/lua/lua_comm.c
   src/bindings/lua/lua_host.c
@@ -310,8 +470,6 @@ set(LUA_SRC
 set(TRACING_SRC
   src/instr/instr_config.c
   src/instr/instr_interface.c
-  src/instr/instr_msg_process.c
-  src/instr/instr_msg_task.c
   src/instr/instr_paje_containers.c
   src/instr/instr_paje_trace.c
   src/instr/instr_paje_header.c
@@ -319,9 +477,6 @@ set(TRACING_SRC
   src/instr/instr_paje_values.c
   src/instr/instr_private.h
   src/instr/instr_resource_utilization.c
-  src/instr/instr_routing.c
-  src/instr/instr_smpi.c
-  src/instr/instr_surf.c
   )
 
 set(JEDULE_SRC
@@ -346,6 +501,7 @@ set(MC_SRC
   src/mc/mc_request.c
   src/mc/mc_state.c
   src/mc/memory_map.c
+  src/mc/mc_pair.c
   )
 
 set(headers_to_install
@@ -362,6 +518,7 @@ set(headers_to_install
   include/smpi/mpif.h
   include/smpi/smpi.h
   include/smpi/smpi_cocci.h
+  include/smpi/smpi_main.h
   include/surf/simgrid_dtd.h
   include/surf/surf_routing.h
   include/surf/surfxml_parse.h
@@ -453,15 +610,45 @@ endif()
 set(simgrid_sources
   ${BINDINGS_SRC}
   ${GTNETS_USED}
-  ${JEDULE_SRC}
   ${MSG_SRC}
   ${SIMDAG_SRC}
+  ${SIMGRID_SRC}
   ${SIMIX_SRC}
   ${SURF_SRC}
-  ${TRACING_SRC}
   ${XBT_SRC}
   )
 
+if(${HAVE_JEDULE})
+  set(simgrid_sources
+    ${simgrid_sources}
+    ${JEDULE_SRC}
+    )
+else()
+  set(EXTRA_DIST
+    ${EXTRA_DIST}
+    ${JEDULE_SRC}
+    )
+endif()
+
+if(enable_smpi)
+  set(simgrid_sources
+    ${simgrid_sources}
+    ${SMPI_SRC}
+    )
+endif()
+
+if(${HAVE_TRACING})
+  set(simgrid_sources
+    ${simgrid_sources}
+    ${TRACING_SRC}
+    )
+else()
+  set(EXTRA_DIST
+    ${EXTRA_DIST}
+    ${TRACING_SRC}
+    )
+endif()
+
 if(HAVE_MC)
   set(simgrid_sources
     ${simgrid_sources}
@@ -500,135 +687,107 @@ endif()
 
 set(DOC_SOURCES
   doc/AS_hierarchy.png
+  doc/Doxyfile.in
+  doc/Layout.xml
   doc/sg_thread_model.fig
   doc/simix.fig
   doc/surf_nutshell.fig
-  doc/Doxyfile.in
-  doc/FAQ.doc
-  doc/index.doc
-  doc/simgrid.css
-  doc/SimgridDoxygenLayout.xml
   doc/triva-graph_configuration.png
+  doc/triva-graph_configuration.svg
   doc/triva-graph_visualization.png
+  doc/triva-graph_visualization.svg
   doc/triva-time_interval.png
+  doc/triva-time_interval.svg
+
+  doc/HelloWorld/CMakeLists.txt
+  doc/HelloWorld/HelloWorld.c
+  doc/HelloWorld/README
+
+  doc/doxygen/FAQ.doc
+  doc/doxygen/advanced.doc
+  doc/doxygen/bindings.doc
+  doc/doxygen/contributing.doc
+  doc/doxygen/deployment.doc
+  doc/doxygen/footer.html
+  doc/doxygen/getting_started.doc
+  doc/doxygen/header.html
+  doc/doxygen/help.doc
+  doc/doxygen/index.doc
+  doc/doxygen/inside_autotests.doc
+  doc/doxygen/inside_cmake.doc
+  doc/doxygen/inside_doxygen.doc
+  doc/doxygen/inside_extending.doc
+  doc/doxygen/inside_release.doc
+  doc/doxygen/install.doc
+  doc/doxygen/internals.doc
+  doc/doxygen/introduction.doc
+  doc/doxygen/module-msg.doc
+  doc/doxygen/module-sd.doc
+  doc/doxygen/module-simix.doc
+  doc/doxygen/module-surf.doc
+  doc/doxygen/module-smpi.doc
+  doc/doxygen/module-trace.doc
+  doc/doxygen/module-xbt.doc
+  doc/doxygen/modules.doc
+  doc/doxygen/options.doc
+  doc/doxygen/platform.doc
+  doc/doxygen/pls.doc
+  doc/doxygen/stylesheet.css
+  doc/doxygen/tracing.doc
+  doc/doxygen/use.doc
+
+  doc/msg-tuto-src/deployment0.xml
+  doc/msg-tuto-src/deployment1.xml
+  doc/msg-tuto-src/deployment2.xml
+  doc/msg-tuto-src/deployment3.xml
+  doc/msg-tuto-src/deployment_general.xml
+  doc/msg-tuto-src/masterworker0.c
+  doc/msg-tuto-src/masterworker1.c
+  doc/msg-tuto-src/masterworker2.c
+  doc/msg-tuto-src/masterworker3.c
+  doc/msg-tuto-src/masterworker4.c
+  doc/msg-tuto-src/platforms/cloud.xml
+  doc/msg-tuto-src/platforms/g5k.xml
+  doc/msg-tuto-src/platforms/griffon.xml
+  doc/msg-tuto-src/platforms/peers.xml
+  doc/msg-tuto-src/platforms/platform.xml
   )
 
 set(DOC_FIGS
   ${CMAKE_HOME_DIRECTORY}/doc/shared/fig/simgrid_modules.fig
   ${CMAKE_HOME_DIRECTORY}/doc/shared/fig/simgrid_modules2.fig
   )
-  
-set(DOC_SHARED_TAG
-  doc/shared/doxygen/simgriddevguide.tag
-  doc/shared/doxygen/simgridrefguide.tag
-  doc/shared/doxygen/simgriduserguide.tag
-  )
-  
+
 set(DOC_TOOLS
   tools/doxygen/fig2dev_postprocessor.pl
   tools/doxygen/index_create.pl
   tools/doxygen/xbt_log_extract_hierarchy.pl
   )
 
-
-set(USER_GUIDE_SOURCES
-  doc/user_guide/doxygen/footer.html
-  doc/user_guide/doxygen/header.html
-  doc/user_guide/doxygen/UserGuideDoxyfile.in
-  doc/user_guide/doxygen/UserGuideDoxygenLayout.xml
-  doc/user_guide/doxygen/bindings.doc
-  doc/user_guide/doxygen/deployment.doc
-  doc/user_guide/doxygen/examples.doc
-  doc/user_guide/doxygen/index.doc
-  doc/user_guide/doxygen/install.doc
-  doc/user_guide/doxygen/options.doc
-  doc/user_guide/doxygen/platform.doc
-  doc/user_guide/doxygen/pls.doc
-  doc/user_guide/doxygen/tracing.doc
-  doc/user_guide/doxygen/use.doc
-  doc/user_guide/doxygen/stylesheet.css
-  )
-    
-set(REF_GUIDE_SOURCES
-  doc/ref_guide/doxygen/footer.html
-  doc/ref_guide/doxygen/header.html
-  doc/ref_guide/doxygen/main.doc
-  doc/ref_guide/doxygen/module-msg.doc
-  doc/ref_guide/doxygen/module-sd.doc
-  doc/ref_guide/doxygen/module-simix.doc
-  doc/ref_guide/doxygen/module-surf.doc
-  doc/ref_guide/doxygen/module-trace.doc
-  doc/ref_guide/doxygen/module-xbt.doc
-  doc/ref_guide/doxygen/modules.doc
-  doc/ref_guide/doxygen/RefGuideDoxyfile.in
-  doc/ref_guide/doxygen/RefGuideDoxygenLayout.xml
-  doc/ref_guide/doxygen/stylesheet.css
-  )
-
-set(DEV_GUIDE_SOURCES
-  doc/dev_guide/doxygen/footer.html
-  doc/dev_guide/doxygen/header.html
-  doc/dev_guide/doxygen/index.doc
-  doc/dev_guide/doxygen/cmake.doc
-  doc/dev_guide/doxygen/simgrid.doc
-  doc/dev_guide/doxygen/xps.doc
-  doc/dev_guide/doxygen/DevGuideDoxyfile.in
-  doc/dev_guide/doxygen/DevGuideDoxygenLayout.xml
-  doc/dev_guide/doxygen/stylesheet.css
-  )
-
+# these files get copied automatically to the html documentation
 set(DOC_IMG
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/awstats_logo3.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/Paje_MSG_screenshot.jpg
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/Paje_MSG_screenshot_thn.jpg
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/poster_thumbnail.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/README
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/SGicon.gif
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/SGicon.icns
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/SGicon.ico
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_001.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_002.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_003.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_004.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_005.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_006.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_007.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_008.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_009.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_010.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_011.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_012.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_013.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_014.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_015.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_016.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_017.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_018.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_019.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_020.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_021.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_022.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_023.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_024.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_025.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_026.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_027.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_028.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_029.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101_030.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid-101.pdf
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_2011.gif
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_2011.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_2011_small.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_win_2011.bmp
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_win.bmp
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_01.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_02.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_03.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_04.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_05.png
-${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_06.png
-)
+  ${CMAKE_HOME_DIRECTORY}/doc/simgrid.css
+  ${CMAKE_HOME_DIRECTORY}/doc/sc3-description.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/Paje_MSG_screenshot.jpg
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/Paje_MSG_screenshot_thn.jpg
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/SGicon.gif
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/SGicon.icns
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/SGicon.ico
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/awstats_logo3.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/output.goal.pdf
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/poster_thumbnail.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_2011.gif
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_2011.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_2011_small.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_win.bmp
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/simgrid_logo_win_2011.bmp
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_01.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_02.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_03.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_04.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_05.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_06.png
+  )
 
 set(bin_files
   ${bin_files}
@@ -643,7 +802,10 @@ set(txt_files
   ${txt_files}
   AUTHORS
   COPYING
+  README
+  README.java
   ChangeLog
+  ChangeLog.SimGrid-java
   INSTALL
   LICENSE-LGPL-2.1
   NEWS
@@ -652,6 +814,24 @@ set(txt_files
   )
 
 set(EXAMPLES_CMAKEFILES_TXT
+  examples/java/CMakeLists.txt
+  examples/java/async/CMakeLists.txt
+  examples/java/bittorrent/CMakeLists.txt
+  examples/java/chord/CMakeLists.txt
+  examples/java/cloud/CMakeLists.txt
+  examples/java/commTime/CMakeLists.txt
+  examples/java/io/CMakeLists.txt
+  examples/java/kademlia/CMakeLists.txt
+  examples/java/master_slave_bypass/CMakeLists.txt
+  examples/java/master_slave_kill/CMakeLists.txt
+  examples/java/masterslave/CMakeLists.txt
+  examples/java/migration/CMakeLists.txt
+  examples/java/mutualExclusion/CMakeLists.txt
+  examples/java/pingPong/CMakeLists.txt
+  examples/java/priority/CMakeLists.txt
+  examples/java/startKillTime/CMakeLists.txt
+  examples/java/suspend/CMakeLists.txt
+  examples/java/tracing/CMakeLists.txt
   examples/lua/CMakeLists.txt
   examples/msg/CMakeLists.txt
   examples/msg/actions/CMakeLists.txt
@@ -699,8 +879,10 @@ set(TESHSUITE_CMAKEFILES_TXT
   teshsuite/simdag/network/p2p/CMakeLists.txt
   teshsuite/simdag/partask/CMakeLists.txt
   teshsuite/simdag/platforms/CMakeLists.txt
+  teshsuite/simdag/availability/CMakeLists.txt
   teshsuite/xbt/CMakeLists.txt
   teshsuite/smpi/CMakeLists.txt
+  teshsuite/smpi/mpich-test/CMakeLists.txt
   teshsuite/smpi/mpich-test/env/CMakeLists.txt
   teshsuite/smpi/mpich-test/coll/CMakeLists.txt
   teshsuite/smpi/mpich-test/context/CMakeLists.txt
@@ -730,25 +912,21 @@ set(CMAKE_SOURCE_FILES
   buildtools/Cmake/Flags.cmake
   buildtools/Cmake/GenerateDoc.cmake
   buildtools/Cmake/GenerateDocWin.cmake
-  buildtools/Cmake/GenerateRefGuide.cmake
-  buildtools/Cmake/GenerateUserGuide.cmake
-  buildtools/Cmake/GenerateDevGuide.cmake
   buildtools/Cmake/MaintainerMode.cmake
   buildtools/Cmake/MakeExe.cmake
+  buildtools/Cmake/MakeJava.cmake
   buildtools/Cmake/MakeLib.cmake
   buildtools/Cmake/MakeLibWin.cmake
   buildtools/Cmake/Modules/FindF2c.cmake
   buildtools/Cmake/Modules/FindGTnets.cmake
   buildtools/Cmake/Modules/FindGraphviz.cmake
+  buildtools/Cmake/Modules/FindLibunwind.cmake
   buildtools/Cmake/Modules/FindLua51Simgrid.cmake
   buildtools/Cmake/Modules/FindNS3.cmake
-  buildtools/Cmake/Modules/FindPCRE.cmake
-  buildtools/Cmake/Modules/FindPcreWin.cmake
   buildtools/Cmake/Modules/FindRngStream.cmake
   buildtools/Cmake/Modules/FindRubySimgrid.cmake
   buildtools/Cmake/Modules/FindSimGrid.cmake
   buildtools/Cmake/Modules/FindValgrind.cmake
-  buildtools/Cmake/Modules/FindLibunwind.cmake
   buildtools/Cmake/Option.cmake
   buildtools/Cmake/Pipol.cmake
   buildtools/Cmake/PrintArgs.cmake
@@ -761,14 +939,14 @@ set(CMAKE_SOURCE_FILES
   buildtools/Cmake/Scripts/postinstall.sh
   buildtools/Cmake/Scripts/preinstall.sh
   buildtools/Cmake/Scripts/tesh.pl
-  buildtools/Cmake/Scripts/test_java.sh
   buildtools/Cmake/Scripts/update_tesh.pl
   buildtools/Cmake/Supernovae.cmake
   buildtools/Cmake/UnitTesting.cmake
   buildtools/Cmake/src/internal_config.h.in
   buildtools/Cmake/src/simgrid.nsi.in
   buildtools/Cmake/test_prog/prog_AC_CHECK_MCSC.c
-  buildtools/Cmake/test_prog/prog_getline.c
+  buildtools/Cmake/test_prog/prog_gnu_dynlinker.c
+  buildtools/Cmake/test_prog/prog_gtnets.cpp
   buildtools/Cmake/test_prog/prog_mutex_timedlock.c
   buildtools/Cmake/test_prog/prog_printf_null.c
   buildtools/Cmake/test_prog/prog_sem_init.c
@@ -778,7 +956,6 @@ set(CMAKE_SOURCE_FILES
   buildtools/Cmake/test_prog/prog_stackgrowth.c
   buildtools/Cmake/test_prog/prog_stacksetup.c
   buildtools/Cmake/test_prog/prog_thread_storage.c
-  buildtools/Cmake/test_prog/prog_va_copy.c
   buildtools/Cmake/test_prog/prog_vsnprintf.c
   )
 
@@ -789,7 +966,6 @@ set(PLATFORMS_EXAMPLES
   examples/platforms/cluster.xml
   examples/platforms/cluster_and_one_host.xml
   examples/platforms/cluster_no_backbone.xml
-  examples/platforms/cluster_routing_rulebased.xml
   examples/platforms/clusters_routing_full.xml
   examples/platforms/conf/gridpp_grid_2004.conf
   examples/platforms/conf/gridpp_grid_2004.xml
@@ -805,8 +981,10 @@ set(PLATFORMS_EXAMPLES
   examples/platforms/generation_scripts/generate_g5k_platform.pl
   examples/platforms/generation_scripts/generate_g5k_platform_cabinets.pl
   examples/platforms/griffon.xml
+  examples/platforms/meta_cluster.xml
   examples/platforms/multicore_machine.xml
   examples/platforms/prop.xml
+  examples/platforms/routing_cluster.xml
   examples/platforms/storage.xml
   examples/platforms/syscoord/generate_peer_platform.pl
   examples/platforms/syscoord/median_harvard.syscoord
@@ -815,10 +993,8 @@ set(PLATFORMS_EXAMPLES
   examples/platforms/syscoord/median_meridian.xml
   examples/platforms/syscoord/median_p2psim.syscoord
   examples/platforms/syscoord/median_p2psim.xml
-  examples/platforms/vivaldi.xml
-  examples/platforms/routing_cluster.xml
-  examples/platforms/meta_cluster.xml
   examples/platforms/two_peers.xml
+  examples/platforms/vivaldi.xml
   )
 
 set(generated_src_files