fix build

[simgrid.git] / buildtools / Cmake / DefinePackages.cmake

diff --git a/buildtools/Cmake/DefinePackages.cmake b/buildtools/Cmake/DefinePackages.cmake
index 0781798..940acdb 100644 (file)
--- a/buildtools/Cmake/DefinePackages.cmake
+++ b/buildtools/Cmake/DefinePackages.cmake
@@ -35,8 +35,12 @@ set(EXTRA_DIST
   src/simix/smx_smurf_private.h
   src/simix/smx_synchro_private.h
   src/smpi/README
+  src/smpi/colls/colls.h
+  src/smpi/colls/colls_private.h
+  src/smpi/colls/coll_tuned_topo.h
   src/smpi/private.h
   src/smpi/smpi_mpi_dt_private.h
+  src/surf/cpu_cas01_private.h
   src/surf/cpu_ti_private.h
   src/surf/gtnets/gtnets_interface.h
   src/surf/gtnets/gtnets_simulator.h
@@ -107,9 +111,47 @@ set(SMPI_SRC
   src/smpi/smpi_mpi_dt.c
   src/smpi/smpi_pmpi.c
   src/smpi/smpi_replay.c
+  src/smpi/colls/smpi_openmpi_selector.c
+  src/smpi/colls/smpi_mpich_selector.c
+  src/smpi/colls/colls_global.c
+  src/smpi/colls/allgather-2dmesh.c
+  src/smpi/colls/allgather-3dmesh.c
+  src/smpi/colls/allgather-bruck.c
+  src/smpi/colls/allgather-GB.c
+  src/smpi/colls/allgather-loosely-lr.c
+  src/smpi/colls/allgather-NTSLR.c
+  src/smpi/colls/allgather-NTSLR-NB.c
+  src/smpi/colls/allgather-pair.c
+  src/smpi/colls/allgather-rdb.c
+  src/smpi/colls/allgather-rhv.c
+  src/smpi/colls/allgather-ring.c
+  src/smpi/colls/allgather-SMP-NTS.c
+  src/smpi/colls/allgather-smp-simple.c
+  src/smpi/colls/allgather-spreading-simple.c
+  src/smpi/colls/allgather-ompi-neighborexchange.c
+  src/smpi/colls/allgatherv-GB.c  
+  src/smpi/colls/allgatherv-pair.c
+  src/smpi/colls/allgatherv-ring.c
+  src/smpi/colls/allgatherv-ompi-neighborexchange.c
+  src/smpi/colls/allgatherv-ompi-bruck.c
+  src/smpi/colls/allgatherv-mpich-rdb.c
+  src/smpi/colls/allgatherv-mpich-ring.c
+  src/smpi/colls/allreduce-lr.c
+  src/smpi/colls/allreduce-rab1.c
+  src/smpi/colls/allreduce-rab2.c
+  src/smpi/colls/allreduce-rab-rdb.c
+  src/smpi/colls/allreduce-rdb.c
+  src/smpi/colls/allreduce-redbcast.c
+  src/smpi/colls/allreduce-smp-binomial.c
+  src/smpi/colls/allreduce-smp-binomial-pipeline.c
+  src/smpi/colls/allreduce-smp-rdb.c
+  src/smpi/colls/allreduce-smp-rsag.c
+  src/smpi/colls/allreduce-smp-rsag-lr.c
+  src/smpi/colls/allreduce-smp-rsag-rab.c
+  src/smpi/colls/allreduce-ompi-ring-segmented.c
   src/smpi/colls/alltoall-2dmesh.c
   src/smpi/colls/alltoall-3dmesh.c
-  #  src/smpi/colls/alltoall-bruck.c
+#  src/smpi/colls/alltoall-bruck.c
   src/smpi/colls/alltoall-pair.c
   src/smpi/colls/alltoall-pair-light-barrier.c
   src/smpi/colls/alltoall-pair-mpi-barrier.c
@@ -119,7 +161,45 @@ set(SMPI_SRC
   src/smpi/colls/alltoall-ring-light-barrier.c
   src/smpi/colls/alltoall-ring-mpi-barrier.c
   src/smpi/colls/alltoall-ring-one-barrier.c
-  src/smpi/colls/alltoall-simple.c
+  src/smpi/colls/alltoallv-pair.c   
+  src/smpi/colls/alltoallv-pair-light-barrier.c
+  src/smpi/colls/alltoallv-pair-mpi-barrier.c
+  src/smpi/colls/alltoallv-pair-one-barrier.c 
+  src/smpi/colls/alltoallv-ring.c
+  src/smpi/colls/alltoallv-ring-light-barrier.c
+  src/smpi/colls/alltoallv-ring-mpi-barrier.c
+  src/smpi/colls/alltoallv-ring-one-barrier.c
+  src/smpi/colls/alltoallv-bruck.c
+  src/smpi/colls/alltoallv-ompi-basic-linear.c
+  src/smpi/colls/bcast-arrival-pattern-aware.c
+  src/smpi/colls/bcast-arrival-pattern-aware-wait.c
+  src/smpi/colls/bcast-arrival-scatter.c
+  src/smpi/colls/bcast-binomial-tree.c
+  src/smpi/colls/bcast-flattree.c
+  src/smpi/colls/bcast-flattree-pipeline.c
+  src/smpi/colls/bcast-NTSB.c
+  src/smpi/colls/bcast-NTSL.c
+  src/smpi/colls/bcast-NTSL-Isend.c
+  src/smpi/colls/bcast-scatter-LR-allgather.c
+  src/smpi/colls/bcast-scatter-rdb-allgather.c
+  src/smpi/colls/bcast-SMP-binary.c
+  src/smpi/colls/bcast-SMP-binomial.c
+  src/smpi/colls/bcast-SMP-linear.c
+  src/smpi/colls/coll_tuned_topo.c
+  src/smpi/colls/bcast-ompi-split-bintree.c
+  src/smpi/colls/bcast-ompi-pipeline.c
+  src/smpi/colls/reduce-arrival-pattern-aware.c
+  src/smpi/colls/reduce-binomial.c
+  src/smpi/colls/reduce-flat-tree.c
+  src/smpi/colls/reduce-NTSL.c
+  src/smpi/colls/reduce-scatter-gather.c
+  src/smpi/colls/reduce-ompi.c
+  src/smpi/colls/gather-ompi.c
+  src/smpi/colls/reduce_scatter-ompi.c
+  src/smpi/colls/reduce_scatter-mpich.c
+  src/smpi/colls/smpi_automatic_selector.c
+  src/smpi/colls/scatter-ompi.c
+  src/smpi/colls/barrier-ompi.c
   )
 
 if(SMPI_F2C)
@@ -222,7 +302,6 @@ set(SURF_SRC
   src/surf/surf_routing_full.c
   src/surf/surf_routing_generic.c
   src/surf/surf_routing_none.c
-  src/surf/surf_routing_rulebased.c
   src/surf/surf_routing_vivaldi.c
   src/surf/surfxml_parse.c
   src/surf/surfxml_parseplatf.c
@@ -265,6 +344,7 @@ set(MSG_SRC
   src/msg/msg_io.c
   src/msg/msg_mailbox.c
   src/msg/msg_process.c
+  src/msg/msg_synchro.c
   src/msg/msg_task.c
   src/msg/msg_vm.c
   )
@@ -328,6 +408,8 @@ set(BINDINGS_SRC
 set(JMSG_C_SRC
   src/bindings/java/jmsg.c
   src/bindings/java/jmsg.h
+  src/bindings/java/jmsg_as.c
+  src/bindings/java/jmsg_as.h
   src/bindings/java/jmsg_comm.c
   src/bindings/java/jmsg_comm.h
   src/bindings/java/jmsg_file.c
@@ -353,6 +435,7 @@ set(JMSG_C_SRC
 )
 
 set(JMSG_JAVA_SRC
+  src/bindings/java/org/simgrid/msg/As.java    
   src/bindings/java/org/simgrid/msg/Comm.java
   src/bindings/java/org/simgrid/msg/File.java
   src/bindings/java/org/simgrid/msg/Host.java
@@ -362,6 +445,7 @@ set(JMSG_JAVA_SRC
   src/bindings/java/org/simgrid/msg/Msg.java
   src/bindings/java/org/simgrid/msg/MsgException.java
   src/bindings/java/org/simgrid/msg/Mutex.java
+  src/bindings/java/org/simgrid/msg/Semaphore.java
   src/bindings/java/org/simgrid/msg/NativeException.java
   src/bindings/java/org/simgrid/msg/Process.java
   src/bindings/java/org/simgrid/msg/ProcessKilledError.java
@@ -467,7 +551,6 @@ set(headers_to_install
   include/xbt/dynar.h
   include/xbt/ex.h
   include/xbt/fifo.h
-  include/xbt/file_stat.h
   include/xbt/function_types.h
   include/xbt/graph.h
   include/xbt/graphxml.h
@@ -550,9 +633,7 @@ set(simgrid_sources
   ${SIMGRID_SRC}
   ${SIMIX_SRC}
   ${SURF_SRC}
-  ${TRACING_SRC}
   ${XBT_SRC}
-  ${SMPI_SRC}
   )
 
 if(${HAVE_JEDULE})
@@ -567,6 +648,13 @@ else()
     )
 endif()
 
+if(enable_smpi)
+  set(simgrid_sources
+    ${simgrid_sources}
+    ${SMPI_SRC}
+    )
+endif()
+
 if(${HAVE_TRACING})
   set(simgrid_sources
     ${simgrid_sources}
@@ -616,7 +704,6 @@ else()
 endif()
 
 set(DOC_SOURCES
-  doc/AS_hierarchy.png
   doc/Doxyfile.in
   doc/Layout.xml
   doc/sg_thread_model.fig
@@ -631,7 +718,6 @@ set(DOC_SOURCES
 
   doc/HelloWorld/CMakeLists.txt
   doc/HelloWorld/HelloWorld.c
-  doc/HelloWorld/FindPcreWin.cmake
   doc/HelloWorld/README
 
   doc/doxygen/FAQ.doc
@@ -656,6 +742,7 @@ set(DOC_SOURCES
   doc/doxygen/module-sd.doc
   doc/doxygen/module-simix.doc
   doc/doxygen/module-surf.doc
+  doc/doxygen/module-smpi.doc
   doc/doxygen/module-trace.doc
   doc/doxygen/module-xbt.doc
   doc/doxygen/modules.doc
@@ -681,6 +768,8 @@ set(DOC_SOURCES
   doc/msg-tuto-src/platforms/griffon.xml
   doc/msg-tuto-src/platforms/peers.xml
   doc/msg-tuto-src/platforms/platform.xml
+  
+  CITATION.bib
   )
 
 set(DOC_FIGS
@@ -698,6 +787,7 @@ set(DOC_TOOLS
 set(DOC_IMG
   ${CMAKE_HOME_DIRECTORY}/doc/simgrid.css
   ${CMAKE_HOME_DIRECTORY}/doc/sc3-description.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/AS_hierarchy.png
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/Paje_MSG_screenshot.jpg
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/Paje_MSG_screenshot_thn.jpg
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/SGicon.gif
@@ -717,6 +807,8 @@ set(DOC_IMG
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_04.png
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_05.png
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_06.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/smpi_simgrid_alltoall_pair_16.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/smpi_simgrid_alltoall_ring_16.png
   )
 
 set(bin_files
@@ -766,8 +858,12 @@ set(EXAMPLES_CMAKEFILES_TXT
   examples/msg/CMakeLists.txt
   examples/msg/actions/CMakeLists.txt
   examples/msg/bittorrent/CMakeLists.txt
+  examples/msg/chainsend/CMakeLists.txt
   examples/msg/chord/CMakeLists.txt
   examples/msg/cloud/CMakeLists.txt
+  examples/msg/energy/e1/CMakeLists.txt
+  examples/msg/energy/e2/CMakeLists.txt
+  examples/msg/energy/e3/CMakeLists.txt
   examples/msg/gpu/CMakeLists.txt
   examples/msg/gtnets/CMakeLists.txt
   examples/msg/icomms/CMakeLists.txt
@@ -778,19 +874,25 @@ set(EXAMPLES_CMAKEFILES_TXT
   examples/msg/migration/CMakeLists.txt
   examples/msg/ns3/CMakeLists.txt
   examples/msg/parallel_task/CMakeLists.txt
+  examples/msg/pastry/CMakeLists.txt
   examples/msg/pmm/CMakeLists.txt
   examples/msg/priority/CMakeLists.txt
   examples/msg/properties/CMakeLists.txt
+  examples/msg/semaphores/CMakeLists.txt
   examples/msg/sendrecv/CMakeLists.txt
-  examples/msg/chainsend/CMakeLists.txt
   examples/msg/start_kill_time/CMakeLists.txt
   examples/msg/suspend/CMakeLists.txt
   examples/msg/token_ring/CMakeLists.txt
   examples/msg/tracing/CMakeLists.txt
+  examples/scala/CMakeLists.txt
+  examples/scala/master_slave_bypass/CMakeLists.txt
+  examples/scala/master_slave_kill/CMakeLists.txt
+  examples/scala/masterslave/CMakeLists.txt
   examples/simdag/CMakeLists.txt
   examples/simdag/dax/CMakeLists.txt
   examples/simdag/dot/CMakeLists.txt
   examples/simdag/goal/CMakeLists.txt
+  examples/simdag/io/CMakeLists.txt
   examples/simdag/metaxml/CMakeLists.txt
   examples/simdag/properties/CMakeLists.txt
   examples/simdag/scheduling/CMakeLists.txt
@@ -804,20 +906,33 @@ set(TESHSUITE_CMAKEFILES_TXT
   teshsuite/msg/CMakeLists.txt
   teshsuite/msg/trace/CMakeLists.txt
   teshsuite/simdag/CMakeLists.txt
+  teshsuite/simdag/availability/CMakeLists.txt
   teshsuite/simdag/network/CMakeLists.txt
   teshsuite/simdag/network/mxn/CMakeLists.txt
   teshsuite/simdag/network/p2p/CMakeLists.txt
   teshsuite/simdag/partask/CMakeLists.txt
   teshsuite/simdag/platforms/CMakeLists.txt
-  teshsuite/simdag/availability/CMakeLists.txt
-  teshsuite/xbt/CMakeLists.txt
   teshsuite/smpi/CMakeLists.txt
-  teshsuite/smpi/mpich-test/CMakeLists.txt
-  teshsuite/smpi/mpich-test/env/CMakeLists.txt
-  teshsuite/smpi/mpich-test/coll/CMakeLists.txt
-  teshsuite/smpi/mpich-test/context/CMakeLists.txt
-  teshsuite/smpi/mpich-test/profile/CMakeLists.txt
-  teshsuite/smpi/mpich-test/pt2pt/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/attr/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/comm/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/coll/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/datatype/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/group/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/init/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/pt2pt/CMakeLists.txt
+#  teshsuite/smpi/mpich3-test/f77/attr/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/coll/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/comm/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/datatype/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/ext/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/init/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/pt2pt/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f90/coll/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f90/datatype/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f90/init/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f90/pt2pt/CMakeLists.txt
+  teshsuite/xbt/CMakeLists.txt
   )
 
 set(TOOLS_CMAKEFILES_TXT
@@ -853,10 +968,9 @@ set(CMAKE_SOURCE_FILES
   buildtools/Cmake/Modules/FindLibunwind.cmake
   buildtools/Cmake/Modules/FindLua51Simgrid.cmake
   buildtools/Cmake/Modules/FindNS3.cmake
-  buildtools/Cmake/Modules/FindPCRE.cmake
-  buildtools/Cmake/Modules/FindPcreWin.cmake
   buildtools/Cmake/Modules/FindRngStream.cmake
   buildtools/Cmake/Modules/FindRubySimgrid.cmake
+  buildtools/Cmake/Modules/FindScala.cmake
   buildtools/Cmake/Modules/FindSimGrid.cmake
   buildtools/Cmake/Modules/FindValgrind.cmake
   buildtools/Cmake/Option.cmake
@@ -898,7 +1012,6 @@ set(PLATFORMS_EXAMPLES
   examples/platforms/cluster.xml
   examples/platforms/cluster_and_one_host.xml
   examples/platforms/cluster_no_backbone.xml
-  examples/platforms/cluster_routing_rulebased.xml
   examples/platforms/clusters_routing_full.xml
   examples/platforms/conf/gridpp_grid_2004.conf
   examples/platforms/conf/gridpp_grid_2004.xml
@@ -907,6 +1020,7 @@ set(PLATFORMS_EXAMPLES
   examples/platforms/conf/transform_optorsim_platform.pl
   examples/platforms/config.xml
   examples/platforms/content/storage_content.txt
+  examples/platforms/content/win_storage_content.txt
   examples/platforms/data_center.xml
   examples/platforms/g5k.xml
   examples/platforms/generation_scripts/create_hierarchical_clusters.pl