don't put removed files in the distribution

[simgrid.git] / buildtools / Cmake / DefinePackages.cmake

diff --git a/buildtools/Cmake/DefinePackages.cmake b/buildtools/Cmake/DefinePackages.cmake
index 8987ce3..2e41e3d 100644 (file)
--- a/buildtools/Cmake/DefinePackages.cmake
+++ b/buildtools/Cmake/DefinePackages.cmake
@@ -2,7 +2,6 @@
 
 set(EXTRA_DIST
   include/xbt/win32_ucontext.h
-  src/bindings/java/MANIFEST.MF
   src/include/instr/instr_interface.h
   src/include/mc/datatypes.h
   src/include/mc/mc.h
@@ -35,11 +34,12 @@ set(EXTRA_DIST
   src/simix/smx_smurf_private.h
   src/simix/smx_synchro_private.h
   src/smpi/README
-  src/smpi/colls/COPYRIGHTS
   src/smpi/colls/colls.h
   src/smpi/colls/colls_private.h
+  src/smpi/colls/coll_tuned_topo.h
   src/smpi/private.h
   src/smpi/smpi_mpi_dt_private.h
+  src/surf/cpu_cas01_private.h
   src/surf/cpu_ti_private.h
   src/surf/gtnets/gtnets_interface.h
   src/surf/gtnets/gtnets_simulator.h
@@ -110,13 +110,14 @@ set(SMPI_SRC
   src/smpi/smpi_mpi_dt.c
   src/smpi/smpi_pmpi.c
   src/smpi/smpi_replay.c
+  src/smpi/colls/smpi_openmpi_selector.c
+  src/smpi/colls/smpi_mpich_selector.c
   src/smpi/colls/colls_global.c
   src/smpi/colls/allgather-2dmesh.c
   src/smpi/colls/allgather-3dmesh.c
   src/smpi/colls/allgather-bruck.c
   src/smpi/colls/allgather-GB.c
   src/smpi/colls/allgather-loosely-lr.c
-  src/smpi/colls/allgather-lr.c
   src/smpi/colls/allgather-NTSLR.c
   src/smpi/colls/allgather-NTSLR-NB.c
   src/smpi/colls/allgather-pair.c
@@ -126,16 +127,18 @@ set(SMPI_SRC
   src/smpi/colls/allgather-SMP-NTS.c
   src/smpi/colls/allgather-smp-simple.c
   src/smpi/colls/allgather-spreading-simple.c
+  src/smpi/colls/allgather-ompi-neighborexchange.c
   src/smpi/colls/allgatherv-GB.c  
   src/smpi/colls/allgatherv-pair.c
   src/smpi/colls/allgatherv-ring.c
+  src/smpi/colls/allgatherv-ompi-neighborexchange.c
+  src/smpi/colls/allgatherv-ompi-bruck.c
+  src/smpi/colls/allgatherv-mpich-rdb.c
+  src/smpi/colls/allgatherv-mpich-ring.c
   src/smpi/colls/allreduce-lr.c
-  src/smpi/colls/allreduce-NTS.c
   src/smpi/colls/allreduce-rab1.c
   src/smpi/colls/allreduce-rab2.c
   src/smpi/colls/allreduce-rab-rdb.c
-  #src/smpi/colls/allreduce-rab-reduce-scatter.c
-  src/smpi/colls/allreduce-rab-rsag.c
   src/smpi/colls/allreduce-rdb.c
   src/smpi/colls/allreduce-redbcast.c
   src/smpi/colls/allreduce-smp-binomial.c
@@ -144,9 +147,10 @@ set(SMPI_SRC
   src/smpi/colls/allreduce-smp-rsag.c
   src/smpi/colls/allreduce-smp-rsag-lr.c
   src/smpi/colls/allreduce-smp-rsag-rab.c
+  src/smpi/colls/allreduce-ompi-ring-segmented.c
   src/smpi/colls/alltoall-2dmesh.c
   src/smpi/colls/alltoall-3dmesh.c
-  #src/smpi/colls/alltoall-bruck.c
+#  src/smpi/colls/alltoall-bruck.c
   src/smpi/colls/alltoall-pair.c
   src/smpi/colls/alltoall-pair-light-barrier.c
   src/smpi/colls/alltoall-pair-mpi-barrier.c
@@ -156,7 +160,6 @@ set(SMPI_SRC
   src/smpi/colls/alltoall-ring-light-barrier.c
   src/smpi/colls/alltoall-ring-mpi-barrier.c
   src/smpi/colls/alltoall-ring-one-barrier.c
-  src/smpi/colls/alltoall-simple.c
   src/smpi/colls/alltoallv-pair.c   
   src/smpi/colls/alltoallv-pair-light-barrier.c
   src/smpi/colls/alltoallv-pair-mpi-barrier.c
@@ -166,7 +169,7 @@ set(SMPI_SRC
   src/smpi/colls/alltoallv-ring-mpi-barrier.c
   src/smpi/colls/alltoallv-ring-one-barrier.c
   src/smpi/colls/alltoallv-bruck.c
-  src/smpi/colls/bcast-arrival-nb.c
+  src/smpi/colls/alltoallv-ompi-basic-linear.c
   src/smpi/colls/bcast-arrival-pattern-aware.c
   src/smpi/colls/bcast-arrival-pattern-aware-wait.c
   src/smpi/colls/bcast-arrival-scatter.c
@@ -181,11 +184,21 @@ set(SMPI_SRC
   src/smpi/colls/bcast-SMP-binary.c
   src/smpi/colls/bcast-SMP-binomial.c
   src/smpi/colls/bcast-SMP-linear.c
+  src/smpi/colls/coll_tuned_topo.c
+  src/smpi/colls/bcast-ompi-split-bintree.c
+  src/smpi/colls/bcast-ompi-pipeline.c
   src/smpi/colls/reduce-arrival-pattern-aware.c
   src/smpi/colls/reduce-binomial.c
   src/smpi/colls/reduce-flat-tree.c
   src/smpi/colls/reduce-NTSL.c
   src/smpi/colls/reduce-scatter-gather.c
+  src/smpi/colls/reduce-ompi.c
+  src/smpi/colls/gather-ompi.c
+  src/smpi/colls/reduce_scatter-ompi.c
+  src/smpi/colls/reduce_scatter-mpich.c
+  src/smpi/colls/smpi_automatic_selector.c
+  src/smpi/colls/scatter-ompi.c
+  src/smpi/colls/barrier-ompi.c
   )
 
 if(SMPI_F2C)
@@ -330,6 +343,7 @@ set(MSG_SRC
   src/msg/msg_io.c
   src/msg/msg_mailbox.c
   src/msg/msg_process.c
+  src/msg/msg_synchro.c
   src/msg/msg_task.c
   src/msg/msg_vm.c
   )
@@ -393,6 +407,8 @@ set(BINDINGS_SRC
 set(JMSG_C_SRC
   src/bindings/java/jmsg.c
   src/bindings/java/jmsg.h
+  src/bindings/java/jmsg_as.c
+  src/bindings/java/jmsg_as.h
   src/bindings/java/jmsg_comm.c
   src/bindings/java/jmsg_comm.h
   src/bindings/java/jmsg_file.c
@@ -418,6 +434,7 @@ set(JMSG_C_SRC
 )
 
 set(JMSG_JAVA_SRC
+  src/bindings/java/org/simgrid/msg/As.java    
   src/bindings/java/org/simgrid/msg/Comm.java
   src/bindings/java/org/simgrid/msg/File.java
   src/bindings/java/org/simgrid/msg/Host.java
@@ -427,6 +444,7 @@ set(JMSG_JAVA_SRC
   src/bindings/java/org/simgrid/msg/Msg.java
   src/bindings/java/org/simgrid/msg/MsgException.java
   src/bindings/java/org/simgrid/msg/Mutex.java
+  src/bindings/java/org/simgrid/msg/Semaphore.java
   src/bindings/java/org/simgrid/msg/NativeException.java
   src/bindings/java/org/simgrid/msg/Process.java
   src/bindings/java/org/simgrid/msg/ProcessKilledError.java
@@ -471,7 +489,9 @@ set(TRACING_SRC
   src/instr/instr_config.c
   src/instr/instr_interface.c
   src/instr/instr_paje_containers.c
+  src/instr/instr_TI_trace.c
   src/instr/instr_paje_trace.c
+  src/instr/instr_trace.c
   src/instr/instr_paje_header.c
   src/instr/instr_paje_types.c
   src/instr/instr_paje_values.c
@@ -515,7 +535,6 @@ set(headers_to_install
   include/simgrid/platf_generator.h
   include/simgrid/simix.h
   include/smpi/mpi.h
-  include/smpi/mpif.h
   include/smpi/smpi.h
   include/smpi/smpi_cocci.h
   include/smpi/smpi_main.h
@@ -532,7 +551,6 @@ set(headers_to_install
   include/xbt/dynar.h
   include/xbt/ex.h
   include/xbt/fifo.h
-  include/xbt/file_stat.h
   include/xbt/function_types.h
   include/xbt/graph.h
   include/xbt/graphxml.h
@@ -562,6 +580,7 @@ set(headers_to_install
   )
 set(source_of_generated_headers
   include/simgrid_config.h.in
+  include/smpi/mpif.h.in
   include/smpi/smpif.h.in
   src/context_sysv_config.h.in)
 
@@ -686,7 +705,6 @@ else()
 endif()
 
 set(DOC_SOURCES
-  doc/AS_hierarchy.png
   doc/Doxyfile.in
   doc/Layout.xml
   doc/sg_thread_model.fig
@@ -751,6 +769,8 @@ set(DOC_SOURCES
   doc/msg-tuto-src/platforms/griffon.xml
   doc/msg-tuto-src/platforms/peers.xml
   doc/msg-tuto-src/platforms/platform.xml
+  
+  CITATION.bib
   )
 
 set(DOC_FIGS
@@ -768,6 +788,7 @@ set(DOC_TOOLS
 set(DOC_IMG
   ${CMAKE_HOME_DIRECTORY}/doc/simgrid.css
   ${CMAKE_HOME_DIRECTORY}/doc/sc3-description.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/AS_hierarchy.png
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/Paje_MSG_screenshot.jpg
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/Paje_MSG_screenshot_thn.jpg
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/SGicon.gif
@@ -787,6 +808,8 @@ set(DOC_IMG
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_04.png
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_05.png
   ${CMAKE_HOME_DIRECTORY}/doc/webcruft/win_install_06.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/smpi_simgrid_alltoall_pair_16.png
+  ${CMAKE_HOME_DIRECTORY}/doc/webcruft/smpi_simgrid_alltoall_ring_16.png
   )
 
 set(bin_files
@@ -832,16 +855,16 @@ set(EXAMPLES_CMAKEFILES_TXT
   examples/java/startKillTime/CMakeLists.txt
   examples/java/suspend/CMakeLists.txt
   examples/java/tracing/CMakeLists.txt
-  examples/scala/CMakeLists.txt
-  examples/scala/masterslave/CMakeLists.txt
-  examples/scala/master_slave_bypass/CMakeLists.txt
-  examples/scala/master_slave_kill/CMakeLists.txt
   examples/lua/CMakeLists.txt
   examples/msg/CMakeLists.txt
   examples/msg/actions/CMakeLists.txt
   examples/msg/bittorrent/CMakeLists.txt
+  examples/msg/chainsend/CMakeLists.txt
   examples/msg/chord/CMakeLists.txt
   examples/msg/cloud/CMakeLists.txt
+  examples/msg/energy/e1/CMakeLists.txt
+  examples/msg/energy/e2/CMakeLists.txt
+  examples/msg/energy/e3/CMakeLists.txt
   examples/msg/gpu/CMakeLists.txt
   examples/msg/gtnets/CMakeLists.txt
   examples/msg/icomms/CMakeLists.txt
@@ -852,47 +875,66 @@ set(EXAMPLES_CMAKEFILES_TXT
   examples/msg/migration/CMakeLists.txt
   examples/msg/ns3/CMakeLists.txt
   examples/msg/parallel_task/CMakeLists.txt
+  examples/msg/pastry/CMakeLists.txt
   examples/msg/pmm/CMakeLists.txt
   examples/msg/priority/CMakeLists.txt
   examples/msg/properties/CMakeLists.txt
+  examples/msg/semaphores/CMakeLists.txt
   examples/msg/sendrecv/CMakeLists.txt
-  examples/msg/chainsend/CMakeLists.txt
   examples/msg/start_kill_time/CMakeLists.txt
   examples/msg/suspend/CMakeLists.txt
   examples/msg/token_ring/CMakeLists.txt
   examples/msg/tracing/CMakeLists.txt
+  examples/scala/CMakeLists.txt
+  examples/scala/master_slave_bypass/CMakeLists.txt
+  examples/scala/master_slave_kill/CMakeLists.txt
+  examples/scala/masterslave/CMakeLists.txt
   examples/simdag/CMakeLists.txt
   examples/simdag/dax/CMakeLists.txt
   examples/simdag/dot/CMakeLists.txt
   examples/simdag/goal/CMakeLists.txt
+  examples/simdag/io/CMakeLists.txt
   examples/simdag/metaxml/CMakeLists.txt
   examples/simdag/properties/CMakeLists.txt
   examples/simdag/scheduling/CMakeLists.txt
   examples/smpi/CMakeLists.txt
   examples/smpi/MM/CMakeLists.txt
   examples/xbt/CMakeLists.txt
-  examples/test/CMakeLists.txt
   )
 
 set(TESHSUITE_CMAKEFILES_TXT
-  teshsuite/CMakeLists.txt
   teshsuite/msg/CMakeLists.txt
+  teshsuite/msg/storage/CMakeLists.txt
   teshsuite/msg/trace/CMakeLists.txt
   teshsuite/simdag/CMakeLists.txt
+  teshsuite/simdag/availability/CMakeLists.txt
   teshsuite/simdag/network/CMakeLists.txt
   teshsuite/simdag/network/mxn/CMakeLists.txt
   teshsuite/simdag/network/p2p/CMakeLists.txt
   teshsuite/simdag/partask/CMakeLists.txt
   teshsuite/simdag/platforms/CMakeLists.txt
-  teshsuite/simdag/availability/CMakeLists.txt
-  teshsuite/xbt/CMakeLists.txt
+  teshsuite/simix/CMakeLists.txt
   teshsuite/smpi/CMakeLists.txt
-  teshsuite/smpi/mpich-test/CMakeLists.txt
-  teshsuite/smpi/mpich-test/env/CMakeLists.txt
-  teshsuite/smpi/mpich-test/coll/CMakeLists.txt
-  teshsuite/smpi/mpich-test/context/CMakeLists.txt
-  teshsuite/smpi/mpich-test/profile/CMakeLists.txt
-  teshsuite/smpi/mpich-test/pt2pt/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/attr/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/comm/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/coll/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/datatype/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/group/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/init/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/pt2pt/CMakeLists.txt
+#  teshsuite/smpi/mpich3-test/f77/attr/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/coll/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/comm/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/datatype/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/ext/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/init/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f77/pt2pt/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f90/coll/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f90/datatype/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f90/init/CMakeLists.txt
+  teshsuite/smpi/mpich3-test/f90/pt2pt/CMakeLists.txt
+  teshsuite/xbt/CMakeLists.txt
   )
 
 set(TOOLS_CMAKEFILES_TXT
@@ -980,6 +1022,7 @@ set(PLATFORMS_EXAMPLES
   examples/platforms/conf/transform_optorsim_platform.pl
   examples/platforms/config.xml
   examples/platforms/content/storage_content.txt
+  examples/platforms/content/win_storage_content.txt
   examples/platforms/data_center.xml
   examples/platforms/g5k.xml
   examples/platforms/generation_scripts/create_hierarchical_clusters.pl