# Can be called from the bash script with the following code:
# export R_INPUT=$inputfile
# export R_OUTPUT=$outputfile
+# export R_TYPE=$hist_type
+
# R CMD BATCH $this_script.R
+#or
+# Rscript $this_script.R
# Use functions from bench.h to benchmark execution time of the desired block,
# then Rhist.R script to read all timings and produce histograms
# and finally inject.h to inject values instead of executing block
+# This is a small function to help merging empty nbins for dhist histograms
+merge_empty_bins <- function (h)
+{
+ i<-1
+ j<-1
+ counts2<--1
+ breaks2<-h$breaks[1]
+
+ if (length(h$counts)>1)
+ for(i in 1:(length(h$counts)-1))
+ {
+ if(h$counts[i]!=0 || h$counts[i+1]!=0)
+ {
+ counts2[j]<-h$counts[i]
+ breaks2[j+1]<-h$breaks[i+1];
+ j<-j+1
+ }
+ }
+ counts2[j]<-h$counts[length(h$counts)]
+ breaks2[j+1]<-h$breaks[length(h$breaks)]
+
+ h$counts<-counts2
+ h$breaks<-breaks2
+
+ return (h)
+}
+
+# Main
+source("analysis/hist_script/Rdhist.R")
+
inputfile<-Sys.getenv("R_INPUT")
outputfile<-Sys.getenv("R_OUTPUT")
+type<-Sys.getenv("R_TYPE")
+
+if (!(type %in% c("mean","default","sturges","scott")))
+ {
+ stop("Wrong histogram type")
+ }
df<-read.table(inputfile,header=F)
df<-df[,c(1,4)]
for(i in unique(NAME))
{
vector1<-df[NAME==i,2]
- h<-hist(vector1)
-
+
+ if (length(vector1)==1)
+ {
+ #If there is only one element
+ h<-hist(vector1) # Just for R compatibility reasons
+ h$breaks<-c(vector1,vector1)
+ h$counts<-1
+ }
+ else
+ {
+ if (type=="mean")
+ {
+ #Mean value only
+ h<-hist(vector1) # Just for R compatibility reasons
+ h$breaks<-c(mean(vector1),mean(vector1))
+ h$counts<-length(vector1)
+ }
+ else
+ if (type=="default")
+ #Standard HISTOGRAM:
+ h<-hist(vector1)
+ else
+ {
+ #Dhist:
+ h<-dhist(vector1,nbins=type, plot = FALSE, lab.spikes = FALSE, a=5*iqr(vector1), eps=0.15)
+ h$breaks<-h$xbr
+ h$count<-as.vector(h$counts)
+ h$counts<-h$count
+ h<-merge_empty_bins(h)
+ }
+ }
+
cat(i, file = outputfile, sep = "\t", append = TRUE)
- cat(" ", file = outputfile, sep = "\t", append = TRUE)
- cat(sprintf("%.8f", mean(vector1)), file =outputfile, sep = "\t ", append = TRUE)
+ cat("\t", file = outputfile, append = TRUE)
+ cat(sum(h$counts), file =outputfile, sep = "\t", append = TRUE)
+ cat("\t", file = outputfile, append = TRUE)
+ cat(sprintf("%.8f", mean(vector1)), file =outputfile, sep = "\t", append = TRUE)
cat("\t", file = outputfile, append = TRUE)
cat(length(h$breaks), file = outputfile, append = TRUE)
cat("\t", file = outputfile, append = TRUE)
- cat(sprintf("%.8f", h$breaks), file = outputfile, sep = " \t", append = TRUE)
+ cat(sprintf("%.8f", h$breaks), file = outputfile, sep = "\t", append = TRUE)
cat("\t", file = outputfile, append = TRUE)
h$density = h$counts/sum(h$counts)
- cat(sprintf("%.14f", h$density), file = outputfile, sep = " \t", append = TRUE)
+ cat(sprintf("%.8f", h$density), file = outputfile, sep = "\t", append = TRUE)
cat("\n", file = outputfile, append = TRUE)
}
